RNA id: TU2464397



Basic Information


Item Value
RNA id TU2464397
length 209
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2155397
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14587621 ~ 14587829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggcctacaaacctgactaagttacaccagctctgtcaggaggaatggacaaaaattcacccaacttattgtgggaagcttgtggaaggctacctgaaacgtttgacccaagttaaacaaggTATATGTCTATGGCTGACACTCTcagccatagacatataaacacctagacttacaaaaaaacctagacaatacaagaactaaacaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2464395 lncRNA downstream 608 14586733 ~ 14587013 (-) True G2155395
TU2464392 lncRNA downstream 2649 14584736 ~ 14584972 (-) True G2155393
TU2464386 lncRNA downstream 6728 14580677 ~ 14580893 (-) True G2155387
TU2464375 lncRNA downstream 16622 14570778 ~ 14570999 (-) True G2155376
TU2464328 lncRNA downstream 59803 14515507 ~ 14527818 (-) True G2155331
TU2465089 lncRNA upstream 172243 14760072 ~ 14806562 (-) True G2156035
TU2465290 lncRNA upstream 450992 15038821 ~ 15087213 (-) True LOC110509702
TU2465288 lncRNA upstream 482515 15070344 ~ 15070823 (-) True G2156172
TU2465327 lncRNA upstream 512361 15100190 ~ 15100412 (-) True G2156203
TU2465389 lncRNA upstream 601052 15188881 ~ 15189196 (-) True G2156265
XM_021590728.2 mRNA downstream 95581 14449447 ~ 14492040 (-) True LOC110509692
XM_021590731.2 mRNA downstream 129521 14449447 ~ 14458100 (-) False LOC110509692
XM_021590730.2 mRNA downstream 130784 14449447 ~ 14456837 (-) False LOC110509692
XM_021590729.2 mRNA downstream 131167 14449447 ~ 14456454 (-) False LOC110509692
XM_021590724.2 mRNA downstream 401347 14184291 ~ 14186274 (-) True LOC110509689
XM_021590735.2 mRNA upstream 1946 14589775 ~ 14660570 (-) False LOC110509694
XM_021590736.2 mRNA upstream 1946 14589775 ~ 14705477 (-) False LOC110509694
XM_021590733.2 mRNA upstream 1946 14589775 ~ 14771641 (-) False LOC110509694
XM_021590734.2 mRNA upstream 1946 14589775 ~ 14771641 (-) True LOC110509694
XM_036967588.1 mRNA upstream 226605 14814434 ~ 14943200 (-) False LOC110509697
TU2464104 other downstream 356615 14227820 ~ 14231006 (-) True G2155120
TU2464046 other downstream 363690 14223121 ~ 14223931 (-) True G2155063
TU2463690 other downstream 530742 14054254 ~ 14056879 (-) True si:ch211-202f5.3
TU2463664 other downstream 557851 14028325 ~ 14029770 (-) True cdc26
TU2463583 other downstream 577454 14000525 ~ 14010167 (-) True G2154637
TU2466897 other upstream 1793361 16381190 ~ 16386045 (-) True G2157715
TU2466925 other upstream 1833848 16421677 ~ 16423421 (-) True G2157743
TU2467297 other upstream 2019796 16607625 ~ 16608006 (-) True G2158088
TU2467320 other upstream 2055852 16643681 ~ 16646597 (-) True G2158111
TU2470823 other upstream 4688439 19276268 ~ 19277006 (-) True LOC110509757

Expression Profile