RNA id: TCONS_00056100


Basic Information

Item Value
RNA id TCONS_00056100
length 107
RNA type snRNA
GC content 0.47
exon number 1
gene id XLOC_029016
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40913453 ~ 40913559 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgcttgctacggtggcacatatactaaaattggattgatacagagaagattagcatggcccctgcgaaaggatgacacgcaaatccgtgaagtgcTCCATgatgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000185759

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057393 lncRNA downstream 65892 40846576 ~ 40847561 (-) True XLOC_029009
TCONS_00057392 lncRNA downstream 85093 40825822 ~ 40828360 (-) False XLOC_029008
TCONS_00058279 lncRNA downstream 85606 40825874 ~ 40827847 (-) True XLOC_029008
TCONS_00057391 lncRNA downstream 155737 40756843 ~ 40757716 (-) True XLOC_029007
TCONS_00058277 lncRNA downstream 314711 40552159 ~ 40598742 (-) True XLOC_029004
TCONS_00056109 lncRNA upstream 58327 40971886 ~ 40972393 (-) True XLOC_029024
TCONS_00058280 lncRNA upstream 134748 41048307 ~ 41049657 (-) False XLOC_029025
TCONS_00058281 lncRNA upstream 134748 41048307 ~ 41049674 (-) True XLOC_029025
TCONS_00057394 lncRNA upstream 231116 41144675 ~ 41226294 (-) False XLOC_029026
TCONS_00056113 lncRNA upstream 298473 41212032 ~ 41217739 (-) False XLOC_029026
TCONS_00056093 mRNA downstream 30291 40880433 ~ 40883162 (-) False XLOC_029010
TCONS_00056094 mRNA downstream 30823 40880737 ~ 40882630 (-) True XLOC_029010
TCONS_00056092 mRNA downstream 58919 40846483 ~ 40854534 (-) False XLOC_029009
TCONS_00056089 mRNA downstream 323874 40556679 ~ 40589579 (-) False XLOC_029005
TCONS_00056108 mRNA upstream 57840 40971399 ~ 40972176 (-) False XLOC_029024
TCONS_00056110 mRNA upstream 144133 41057692 ~ 41064494 (-) False XLOC_029026
TCONS_00056111 mRNA upstream 144424 41057983 ~ 41196398 (-) False XLOC_029026
TCONS_00056112 mRNA upstream 288977 41202536 ~ 41209037 (-) True XLOC_029027
TCONS_00056115 mRNA upstream 351646 41265205 ~ 41269844 (-) True XLOC_029028
TCONS_00056099 other downstream 1484 40911863 ~ 40911969 (-) True XLOC_029015
TCONS_00056098 other downstream 5992 40907355 ~ 40907461 (-) True XLOC_029014
TCONS_00056097 other downstream 7579 40905768 ~ 40905874 (-) True XLOC_029013
TCONS_00056096 other downstream 14963 40898384 ~ 40898490 (-) True XLOC_029012
TCONS_00056095 other downstream 15490 40897857 ~ 40897963 (-) True XLOC_029011
TCONS_00056101 other upstream 1480 40915039 ~ 40915145 (-) True XLOC_029017
TCONS_00056102 other upstream 2007 40915566 ~ 40915672 (-) True XLOC_029018
TCONS_00056103 other upstream 2537 40916096 ~ 40916202 (-) True XLOC_029019
TCONS_00056104 other upstream 3062 40916621 ~ 40916727 (-) True XLOC_029020
TCONS_00056105 other upstream 4119 40917678 ~ 40917784 (-) True XLOC_029021