RNA id: TU2464750


Basic Information

Item Value
RNA id TU2464750
length 2738
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2155717
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 15105982 ~ 15108773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCACTGCGTATTTATTTCAAAACATGACAGagtatatacatttgcaaatcaTGTTGAGGGAAAAAAAAGAAGATAAATCAGCAAAAATACACATCAAACAGTGATAAGCAGCATAATAATCATCGTACTATTCACCTGCTTAACATTGAAAATGTATAGCGTTGTAAAACATAGCTAAGTCAATCAAATGTGATTATAGAGTGTGTATAAAGAACGTTCATGGCTTAATTGCATTGAATTAATTATAAATGCCTCTCACTGTATGCATAATAATATTTTCAGCATAAAATCATCATTCAACTATTTTTAATAGTTACGTTTTACTCTAACCAAAAATATAATAATTGCAGTATGAGAACTAGGAAGGATCTCTTCGATTTCTCTTAGATTTCTTCCTAATAAGGAAGGGCAGATTATGGAAAAACAGCAGCGATAAATAAAAGCGATAAATTGTCAGACTAATGTCTCAGTACGTCTGACATAGATATCGTTTTACTCAAATCAGTactgtttctttatttttctccAAAGGAATACCGATCTAAAGACAGTAGCTTGTGAGAGATTCACACATCAGACTGAACTCAAATACTAGCACTAGGCTGGATTCTCCAAAGGGACAAAGCCAGATCTTCAAATtcatgacacacaaacacacgtccaGGTGCGCACACATGCACCCACAAACTGATGTCTATAGATAGCTCTTTGCGTCGGCTTATTTTTTGCCTTCCAGATATTCAGTTAGGCATGCACCTCTCACCACATTGGAGAACTGTGTATGCATGTgcccagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttcagatcagttcagtgtgtgtgagttAATCATCTCCAAGCTGCAGCTCCTGCTATCGTGTGTGATGGGTTTAAATGCTGTAACAACGTTGGGAGCACCTCTGCCACGTGCCTGGTGTCTCCCACACTTTAGGTAGAGGAGACTGGACAGCTTACTATAGTTAGGTACTAGCATGTAAAAACACTGTAAATTCCATGAAACAACACCATGACAGTTCTACACACTGTTTCTCACAGTTaacctttttttattttgacctattttgtgtgtgtatgtgggtgggcAACTTTTTGAAGTTGAATAATATTTGGGTTTGTGTTTCCTGGTAGTAGGCTAAGGGTTAGTTAGTTAGCCTGACTTGGCCTACGGCACGACTGGAGTGGGAGTTTAAGGGTTAACAGCACACGTAAATACTCTAATCACTTCAATTCATTTTCTGACCAATACATTTAGGTAAAAAATATCCACCTGATAGGAAAGTGCCATTctgcttgtttgtgtgtgggtgttgatCTTACCCATGTGACAGCCTGGGATGTTTCGACCATCCCTCATACATTCTCCTTAATTCATCTGCAGATAGCCATTTGTTAATTAATGTCACTGCTTTAGTGTGACACCAGAACTTTTTCAGTGCCATTCAGTAAAATGACATATTGGCCACGTCCCAATATCAGCATATACCACAAAGCACACCACTCTGAATGTATGCCCCAATACATTGCACTCTGAATGTATGCCCAAATACACTCCTTCATTCTAAGTAGTATGCTCGTGTGTGTATGGGTAACCCTAGGTATGGGTAACCCAAATGTTTGTGACGTCATATGGCAGACGTCAATACTGACTGTTTTTCACAACATGTTGTCAACAATACCTAGATAGAGCTTGTTTCTCTCTGGTTCCACAGTAGGCCGATGCATTAACACACCTTCAATGTGCAAGGAAAAACACAAGAAAAGAGAtattataaatataaaataaacaacaacatattcaCGTCACACAAAGAATTCTTGCTATTGAGGGGAATGACTAGAGGGGTGGGGCTTAATAGTCCAGGTTAGAAAGAATGCCACTTGTTGGTTTGTGGTTCAGTTGTGGTTCACTTTTTGACTCTGTTGTGGAGTAGTCCCTAGGTTACTGTAATTAGTTCCGTCTGTTTCTACCTAAACAACAGTAGCTGCCCTCTCGTGGCAGGACCTTCAGACCTCTAGAACCCACTACACTGCTTGCttgtccccttctccctctctcccttgcacCTCTTCTCCTCTTGCACCACTATCCCTTGTCCCCTGTCCCTTATCCCCATCTCTTCTTGCACCCCTCCCCTCTCAAACCATTGTCCCCCTCACCCCTTTTCATTCCCTCCCTTATACCCTTCTCCTCCAGCATCTCTTGTTCTCCTATCATCTTACCCCTCCATTCAGCCTGGTGGTCTGACTTTAGTTAAAGTAGTTAATTAGTTCCCCTGTAGTACTTAGTCATGTCTGCTCTCTGTCCAATCCTCCCCTGACTGGAGTCTTCTGTATGACCTCCTCCACTGTAAGGGTCCAGCCATTCCTCCCCTGTTTAGGCTAGTTCATTCCCAGCCTTGTGATCCTTTGCTGGGGCTCCAGTTCATCCGTTCATCCCTACCCTGGTTAGGTGAACTCAGCGTCCAGCTCCTCAGTGCTGCGGCCCAGGGTAGCGGTGGTCCTTGTGGTGGTCCCTGTGGTGGTCTGCGTGCTGGTCCTATTGGAGGTGGAGTGGGTGGAGTGGACCTTGCCGATCTCCTCCAGAGCGCTGGCCAGAGAGTCCAGGTCCCCTGTGTCCTGGTGCTGGGCCTCCCACAGGCTGAGGATCACCGCCGATGGGCTCTCCTGACGCGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2464521 lncRNA upstream 288066 14814444 ~ 14817916 (+) True G2155517
TU2464457 lncRNA upstream 440948 14664802 ~ 14665034 (+) True G2155455
TU2464456 lncRNA upstream 442887 14662668 ~ 14663095 (+) True G2155454
TU2464404 lncRNA upstream 506161 14599590 ~ 14599821 (+) True G2155402
TU2464403 lncRNA upstream 506599 14599164 ~ 14599383 (+) True G2155401
TU2465563 lncRNA downstream 323861 15432634 ~ 15432922 (+) True G2156433
TU2465599 lncRNA downstream 348300 15457073 ~ 15457322 (+) True G2156469
TU2465610 lncRNA downstream 360814 15469587 ~ 15469788 (+) True G2156480
TU2465611 lncRNA downstream 361375 15470148 ~ 15470489 (+) True G2156481
TU2465625 lncRNA downstream 374382 15483155 ~ 15483360 (+) True G2156495
trnaa-ugc-224 mRNA upstream 75883 15030028 ~ 15030099 (+) True trnaa-ugc-224
XM_021590740.2 mRNA upstream 135770 14956340 ~ 14970212 (+) True LOC110509699
XM_036967986.1 mRNA upstream 136107 14956340 ~ 14969875 (+) False LOC110509699
XR_002471471.2 mRNA upstream 226059 14875717 ~ 14879923 (+) False LOC110509698
XR_002471473.2 mRNA downstream 40515 15149288 ~ 15151748 (+) True LOC110509704
LOC110509331 mRNA downstream 729542 15838315 ~ 15844398 (+) True LOC110509331
XM_021590751.2 mRNA downstream 815078 15923851 ~ 15929722 (+) True LOC110509705
XM_021590764.2 mRNA downstream 922984 16031757 ~ 16061375 (+) False ehmt1b
XM_021590760.2 mRNA downstream 923129 16031902 ~ 16061375 (+) False ehmt1b
TU2464720 other upstream 12033 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 1170163 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 1292012 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 1329848 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 1331894 13772708 ~ 13774088 (+) False G2154391
TU2466780 other downstream 1241944 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 2080571 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 2080730 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 3951770 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 3951770 19060543 ~ 19063907 (+) False LOC110509751

Expression Profile