RNA id: TU2466925


Basic Information

Item Value
RNA id TU2466925
length 1745
RNA type TUCP
GC content 0.41
exon number 1
gene id G2157743
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16421677 ~ 16423421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccAGTTCGCTAcaggaggaaaataatcctgcagcaacatgtaatgtgaattgttatgtggattataattaatggacattaaTAGACTATAGGTTtgcaaattctcagcaacaaaagagtgttcaaattaagatcctacatatgtagaGACAGACAACTACAATGCTGAATTGCTTTATGATCAAAAATATGATGGAAAGAAATTAAATGCACTGCTCTCAATGGCCCATATTCacagtctcagagtaggagtgctgatccaggatcaggtCCCCCGGTCCATATAATTATgattaaaaggctaaactgatctgagatcagcactcctactctgaaacacttTGTGAACACAGGCCAATAATGAACACCCACCTCTTGAGCAATCCTGGCATTGCTGAGCAGCTGCAGGGACAGGGTATGCTGCTTCTTCACTTAGGCTAATTGATTGAATGAAATTATGATTTGGAAAGCAATTGCCCAGTGCTAAAGTGCTTGGGCGGGAGAGCCAGCAGTCCAACATAATGCCTCTTTATTAGAACACCTGAAATAGATCTATAGCCCTTCAATTGAGTTATGTTTTGAATGCACGTAGTATATATCACGTAGTGTGCACAGCAGCTTCAGTGCCATGTTGAATATCAAGACTGCACCTGAGACTGTACCACAAGAATGAGCTGAAACGAGCACTGATAATATGCGGTACATggttttttacaaataaaaaataggcCAGTAACTGTACAAATGTCAAGGATGGCTGAAATCATTATTCTTTTTTGCCTCCGTCACTGCCAACAGGGAGGGAATCAGTTAATTGCAAGAGATCAGGGTTTTAGAGCAGGTTGGTCATTATCTAATCTAAAGAAACAAGTTAAACAACTCAAAAGCGAGTTCCTTGGCGCCTGAAGTACAAGCAGTGGTTTGTCAGTGAGCACCTTTGGGAAGGTCAGTGATGATCTATAGGACAACGTTAGCTGTGTCCAAATGGAACACATTGGTGAGAGGTTGAATCCACTGCATCGGACACAAAACAGACCATTAGGGCATAGGACTGTTCATATACAAAATAGGTCGTTGGCTATTATGGAAAGCTTTACAGCATAATAAACTGTTGCTgtgaaaacaaatggaaaaagataCAAAAAATAACAATTTTATATAGAAATCAAAACAACATTATATAAATTATTCATTACATGATAAACGTCTCTGTAAACGAAAACACAATTGTCCGAAAGAACTTTGGAAATTGATGCACGCTCAAAGAGTAATTTATGTGGAGCCAGTCAATTAGAGAATTGATTGATCTCCACCAAAAATATCAAATGGAAAGAGGAGTGATGCCCTCACAAAATGCCAGAGCGATTGATTCCCTTTGTCTTCTTGTTCTCCAGCTGTCTTGGGGTCCTGAACACAGTCTCTTATCCTCCCTCGGTGAGTCCAAGGGGGTGGGAAATGAGCCTATGggccccatgtctccctctctagctGAAACACACGGGCCCGATGTTGAAGCCAAACTCGTGCGTGACATTTCTGCCCCCGAACACAGCCACATCTCTCACAGGAAGCAGGTTGAGGTCCTCAAATTCAAACACAAACTCCCGCGGCTCCAGCGAGTCCACCTCATCTCCCGGCTGCCACAGcacaaacacagaaaaacaaTTACGCAGTTGGCCAATAATAAACATCAGCGATCAtgaaaaaatcattttttaaatcctATTTCTCATACTTTATATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2466729 lncRNA downstream 133507 16287939 ~ 16288170 (-) True G2157552
TU2466724 lncRNA downstream 140193 16281260 ~ 16281484 (-) True G2157547
TU2466721 lncRNA downstream 145788 16275551 ~ 16275889 (-) True G2157544
TU2466559 lncRNA downstream 390286 16030978 ~ 16031391 (-) True G2157391
TU2466551 lncRNA downstream 400066 16021401 ~ 16021611 (-) True G2157383
TU2466947 lncRNA upstream 24290 16447711 ~ 16451774 (-) True G2157764
TU2467225 lncRNA upstream 37983 16461404 ~ 16463045 (-) True G2158016
TU2467230 lncRNA upstream 48329 16471750 ~ 16472039 (-) True G2158021
TU2467231 lncRNA upstream 49032 16472453 ~ 16472660 (-) True G2158022
TU2467236 lncRNA upstream 56939 16480360 ~ 16480587 (-) True G2158027
XM_021590754.2 mRNA downstream 404178 15970492 ~ 16017499 (-) False LOC110509706
XM_021590752.2 mRNA downstream 404179 15970492 ~ 16017498 (-) False LOC110509706
XM_021590753.2 mRNA downstream 404180 15971942 ~ 16017497 (-) True LOC110509706
XM_036967949.1 mRNA downstream 411733 15970492 ~ 16009944 (-) False LOC110509706
XM_036967783.1 mRNA downstream 996369 15105979 ~ 15425308 (-) False LOC110509703
XM_036968283.1 mRNA upstream 234965 16658386 ~ 16701531 (-) False stxbp1a
XM_036968282.1 mRNA upstream 234965 16658386 ~ 16701533 (-) True stxbp1a
XM_021590777.2 mRNA upstream 341924 16765345 ~ 16775453 (-) False slc31a2
XM_021590778.2 mRNA upstream 341924 16765345 ~ 16776377 (-) True slc31a2
XM_036968297.1 mRNA upstream 435499 16858920 ~ 16866531 (-) True LOC110509719
TU2466897 other downstream 35632 16381190 ~ 16386045 (-) True G2157715
TU2464104 other downstream 2190671 14227820 ~ 14231006 (-) True G2155120
TU2464046 other downstream 2197746 14223121 ~ 14223931 (-) True G2155063
TU2463690 other downstream 2364798 14054254 ~ 14056879 (-) True si:ch211-202f5.3
TU2463664 other downstream 2391907 14028325 ~ 14029770 (-) True cdc26
TU2467297 other upstream 184204 16607625 ~ 16608006 (-) True G2158088
TU2467320 other upstream 220260 16643681 ~ 16646597 (-) True G2158111
TU2470823 other upstream 2852847 19276268 ~ 19277006 (-) True LOC110509757
TU2471632 other upstream 3561124 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 3659724 20083145 ~ 20083618 (-) True G2162127

Expression Profile