RNA id: TU2467244


Basic Information

Item Value
RNA id TU2467244
length 251
lncRNA type intronic
GC content 0.38
exon number 1
gene id G2158035
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16489167 ~ 16489417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GActagtcccaaatagcaccctattccctacatagtgcaatacttttggtTAAAAGTTaggtgtgaacacacacacacagagagagagagagaaacaaaccccaaagccaaaacacacacaaagaacACACTCACTACAATCCTCTTGCCTCTAAAGCTTAATCAGTAGCATTTTAACATAAGCTAAATTCAATTACACAAAAGGTAATCTCTTAAAGTTGTGTCTAACACTCaaactcacactctcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2467238 lncRNA downstream 5037 16483847 ~ 16484130 (-) True G2158029
TU2467236 lncRNA downstream 8580 16480360 ~ 16480587 (-) True G2158027
TU2467231 lncRNA downstream 16507 16472453 ~ 16472660 (-) True G2158022
TU2467230 lncRNA downstream 17128 16471750 ~ 16472039 (-) True G2158021
TU2467225 lncRNA downstream 26122 16461404 ~ 16463045 (-) True G2158016
TU2467245 lncRNA upstream 1426 16490843 ~ 16491051 (-) True G2158036
TU2467246 lncRNA upstream 2205 16491622 ~ 16491898 (-) True G2158037
TU2467260 lncRNA upstream 29292 16518709 ~ 16518931 (-) True G2158051
TU2467262 lncRNA upstream 38467 16527884 ~ 16528168 (-) True G2158053
TU2467269 lncRNA upstream 47557 16536974 ~ 16537700 (-) True G2158060
XM_021590754.2 mRNA downstream 471668 15970492 ~ 16017499 (-) False LOC110509706
XM_021590752.2 mRNA downstream 471669 15970492 ~ 16017498 (-) False LOC110509706
XM_021590753.2 mRNA downstream 471670 15971942 ~ 16017497 (-) True LOC110509706
XM_036967949.1 mRNA downstream 479223 15970492 ~ 16009944 (-) False LOC110509706
XM_036967783.1 mRNA downstream 1063859 15105979 ~ 15425308 (-) False LOC110509703
XM_036968283.1 mRNA upstream 168969 16658386 ~ 16701531 (-) False stxbp1a
XM_036968282.1 mRNA upstream 168969 16658386 ~ 16701533 (-) True stxbp1a
XM_021590777.2 mRNA upstream 275928 16765345 ~ 16775453 (-) False slc31a2
XM_021590778.2 mRNA upstream 275928 16765345 ~ 16776377 (-) True slc31a2
XM_036968297.1 mRNA upstream 369503 16858920 ~ 16866531 (-) True LOC110509719
TU2466925 other downstream 65746 16421677 ~ 16423421 (-) True G2157743
TU2466897 other downstream 103122 16381190 ~ 16386045 (-) True G2157715
TU2464104 other downstream 2258161 14227820 ~ 14231006 (-) True G2155120
TU2464046 other downstream 2265236 14223121 ~ 14223931 (-) True G2155063
TU2463690 other downstream 2432288 14054254 ~ 14056879 (-) True si:ch211-202f5.3
TU2467297 other upstream 118208 16607625 ~ 16608006 (-) True G2158088
TU2467320 other upstream 154264 16643681 ~ 16646597 (-) True G2158111
TU2470823 other upstream 2786851 19276268 ~ 19277006 (-) True LOC110509757
TU2471632 other upstream 3495128 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 3593728 20083145 ~ 20083618 (-) True G2162127

Expression Profile