RNA id: TCONS_00005311


Basic Information

Item Value
RNA id TCONS_00005311
length 2960
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_002868
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32613706 ~ 32639941 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAGAgtgccagtgtgtgtgtatgtgtggagcTCATAGAGCAACCTGTTACATTCACCATGACTTAGTGTGTTTTAAAAACAAGAAGCAAGCATTTGGCACATCAAAATGCATTGGGTTGTTGGTGCCTGGGTAATCACATTACTCTTTGGCTTTGGAAGAGGGCATAACACTTTAATTGAAGGATATGAGCAGACACTGTCAGGTTATCATCTCTGTAACATGACTGAGCTAGTGTCGATGACCAGGGTGGTCTCTTATCCCTCCCCATACACCCAGAGGAGAGCGTGTGGCGGTTGGCTGCCATGGAACATGTGTGACGTCACCGTTTATAAGACAGCATATCAAACAGAGGTGTATTACATCTCCCGACAGGTGAAGACATGTTGCCATGGCTACGAACAAGTTGGTAGTTACTGTGCCTTGCCCTTGAACAGAAGTGCAGAATTCACATCAAAACCAGGACTGTGTCCCTCAGCAAGAGCAACAGGAAATCATTCAGACTCTGGAACTGTGTGCAACTGGGACACAGATTGTCCACAGTGGCAAAAATGCTGTCAGACTGAAAACAACTCCAGCATCTCTCGGTGTTTAGAGCCAGTGCCAGCAGCCAACAGAACCTGGTGCTTCAACGTGACAATAACCGTAAGGACAACCTATGAGCTATTGGCAATCGACAAAGGTCTCTTGAACCACACCAGACTGCTTCACTCTGTGGTGACTGGTGctctgggaaatgctgagttttctGTGCATCATGTCTGGTCGTGGTCAGCAGGGCTCTTCGCAACATCTTCCTCTCTGCTCGTTTGTGCTTCTAAAGATTTCTCTATTGAAGACATCTCTGCAAAACTCTATCAGCTGGGGAACATTGAGGAGGTGACTAATGTGGTGGTGCAAGTTCCCAGTGTCATTGCAGAGCCTTTCATAAACACCACTACTCCATCCTTGATTACTCGCTCAGCGTCAGGAACTAATATGTTCATTGGAGAACCATCGAGTACTGTCACCTCAGGACCATTCTGGACATCTTCACATTCATATAATCCAACCAGCAGCCCACCCtcttctacatgtgATGGCGTACCTGAGATCACCAGAATCTTCTCTTATGATGTCACTGCATCCTCTTTTCACGTGGAATGGATCACCAAAACACAGACCGGGGTCACTTTCCTCCTGCTTTTGCAAAAAAACGGGACTGCGGTGCACGCCTGGAATGACGTCACAAGCTTCAACTGGACATTCACAGACCTGAATCCTGCAGCTCTTTACACTGTACGCGTGACTCCGTCTGCCTGCGGTATCCAAGGAAACCCTGTGGAGATCAAAGTGAGGACAGATGGACAGTTACTTGGAGCTACAGTGCGTTTGACAAACGTTATGTACACCGAGGCATTGAGCGACCCAAACTCTGCTGCATATAAGGAGTTCTGTGACAGCTTCATAAATGAGACTCGTTTGTCCTTGCCGCCAGAGATCCTTGAACTACTCCTGTCTCGAAAGCTCATCCTCCAGATAACATCCATCTCACCTGGCAGCATAATCGTCAACTTCACCATCATATTTCAACCCGGCAGCAACCTGGACATCAGGAACATCTCCAACGCCCTGATGAATTCCCTACAGAACAGCACTAAATATGTGATTGACAAGAACAGTATACATATATCAGATTTAAATGAGTGTTTGCTGGCTGAGGCGGACTGCTCTCGATGGGCTCATTGTATAAACACTGAGGGCTCGTACAGCTGTGACTGTTGGTCTGGATACATAGACTTGAACCCCAGAAGACCGGGACGCAGCTGTGCAGCTTCATCTAATGCTACAGCATCAACTGTTCATCCAGCCACGAACTATACTGAACTATCAAGCGCTGCAATAACTGGCAACCCATCTGTGAGCAGGACTAATGTTCAGAGCAacctcacaacaacaacaatgtcTTCAGCTTCCTCGACCTACGCTAACAGACTGATCCAGGCCATCAGTCCTGCAACAACACTCAACATTACTTGCCACTCTGTCTCCTGTATAACTGTTGAATGCAGCCCCTGGTTAATAAAAGTCGACATAAGGCGAGATTACCTCAAGGCCAATAACATCTCAGAGACCTCCTTGTATCTTGGAAATCCTGAATGCGGGCCCGTTGGGTTTGATGATTCTTATTTGTGGCTCATCACAGCTTGGGATAAGTGTGGCACAACACCAGAACATAACAACACTCACAATTCATTCAGTGTGACTCTGTTCAACAATGTGAGCAGCTCACAGACTACGACGCATCTAAAAGTGCCTGTCACCTGCACGTACCCCAGCAGCGTCATCATCTCCATGGGATACGCTCCGGCAGGGTATTTTGAGATGATCAATGACCCGGTGAATGGATGGGGCAGTTTTGAGGTTCTCATGCGGCTGCTAAACGGGACACATCCTTTACCAGAGAATTACACTATATCGCAAAACGAGAACATCTTTGTGGAGGTCGGGGTCAACACTACCATCTCCCAAATCAAAACAGTCATCAACAAATGTTGGGCAACGTCCAGCAGCGATTCATCACAGCCCTCCAATTATGTGTTTCTGGATAACGGATGTCCTGTGCcagaaaaacacacaaatgttCTTCAGAATGGAAACGGTACCGTGTCTTTGGTGGCTGTGCAGATCTTCTCAGTTGTGAATCTGGACTTTGTGTTCCTGCACTGTGAAATTCAGATCTGCATCGCATTTCAGGACAGTTCATGCATACCTGCTTGTGACCGTCTTCTAAGTGCCAGGTCTTCTAAATTATTTGGACTGACCCGATCCGTTGGACCCTTAAACAGATTACACACaaCAACTTTCCAAAGCGACACATCAAATACTGTGCAGGCTGTTGGATTTGTTCTGCTCGGTGTCGGTGTGTTTCTGCTTTCGCTCACTGTCATTGCAGGATTGCTGTATCAGAAAAGAAAAA

Function

GO:

id name namespace
GO:1990266 neutrophil migration biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0030414 peptidase inhibitor activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-091204-140 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in neutrophil migration. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane; cell surface; and extracellular space. Orthologous to human UMODL1 (uromodulin like 1).

Ensembl:

ensembl_id ENSDART00000099853

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006081 lncRNA downstream 22244 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005771 lncRNA downstream 362860 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006079 lncRNA downstream 362935 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA downstream 373978 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00006078 lncRNA downstream 529082 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00005772 lncRNA upstream 36869 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006082 lncRNA upstream 139939 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00006083 lncRNA upstream 255056 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006084 lncRNA upstream 518648 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005338 lncRNA upstream 977683 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00005307 mRNA downstream 2930 32534904 ~ 32610776 (-) False XLOC_002866
TCONS_00005306 mRNA downstream 54786 32534904 ~ 32558920 (-) False XLOC_002866
TCONS_00005305 mRNA downstream 54789 32534814 ~ 32558917 (-) False XLOC_002866
TCONS_00005304 mRNA downstream 88935 32502354 ~ 32524771 (-) True XLOC_002865
TCONS_00005303 mRNA downstream 89671 32501961 ~ 32524035 (-) False XLOC_002865
TCONS_00005312 mRNA upstream 17555 32657496 ~ 32660716 (-) False XLOC_002869
TCONS_00005313 mRNA upstream 17555 32657496 ~ 32660737 (-) False XLOC_002869
TCONS_00005314 mRNA upstream 17555 32657496 ~ 32663759 (-) True XLOC_002869
TCONS_00005315 mRNA upstream 169679 32809620 ~ 32851847 (-) True XLOC_002872
TCONS_00005316 mRNA upstream 214960 32854901 ~ 32877348 (-) False XLOC_002873
TCONS_00005308 other downstream 2937 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 3012 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 1508952 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2082449 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 2874598 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 736877 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 737060 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 737189 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 1392342 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1687321 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15755554_15770449.mRNA False 4274 mRNA 0.42 17 CI01000304 15754476 ~ 15770768 (-)