RNA id: TU2467776


Basic Information

Item Value
RNA id TU2467776
length 1626
RNA type TUCP
GC content 0.63
exon number 1
gene id G2158499
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17189344 ~ 17191128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGCCCTCTCCTTgtccctcctctcgctctccagcaggtggcgGATGTCCGTCTTGTCCCCGGCATTGTGGATGGAGTAGAGCTCAGCCACCCGCTGCCTCTCCTGCTCCAGTTGGACTCTGCACCGAGCCAGCTCCGCCTGCTCCCCCCCAGCCGCCTCCCTCATGGCCTCCAGCTCTGCTGCCGCCGTCGCTCTTTCCCTGCGCTCCATATCAGCCTGCCGCTCTGCCATGTGCACCCGTTCCTTCAGCGCTGAGATGAGGCCCTGGGCCTCGGCGTTGTCCTGCTCTGCCATTTTCAGCGCCCCGCTCAGGTGCTGCTGCACCCCCAGCAGCTGCTCCCTCTCGAAGTGGGCGCCCTGCGTCAGGTCCACATAGCGGCGCTCCAGCTCCAGGTAGCGCCCGCTCTTAGTGTCCTGCTCGTCGGCCGGGGCATACGCCACGCGGTGCTCATCCAGCAGGCCCCGGAAGTAGTCCATCTGCCGGCAGTAAAGCTCCAGCCGGTCACCCTGCTGGCACAGGGAATCCACCAGGATGGTCCGCTCCTCACCCAGTCGCTCGTTCTCTGTGCTTAGTTCCTGGGTAATCTGCTGCAGATCAGCCAACTCCTGTAGTGTGGCCTGGAGCTCCTCAGAGGTGCAGTGCTGGTTCTCCTCCATCTGGTGAATGCGCTCCGTTAGACAGGCCACCGACACCTCGCTGGTGTTGCCACTACTGCCTCTACGGGAGCGCTCGCCGTGACTCGGTGGCCCGCCCTCTGACTCGGAGGAGGAGCCGCAGGCAGAGGCAGAACCAGAGGGGGCATCCAGGGCATCATCGCTGGAGGTGATTGGCTGGTAGGCTTCGCTGCATTCGCTGTCGGCCGCCTCAGGGGAGATGACTCGCCGGGGGTCAAGAAGGTCTTCAGTAGAGCCGCAGGCAGAGCTGTGAGGGGAGACCTCATGTAAAAAAGAGGCCTGTGGGCACCCTCCATCTCCATAACTGCCATCACGGGCTGGGGGAAGATCCGAGCTAAGGCAGGGGCCTTGCAGGGTCTTTAGGGGGCTGTCCAGCCTCTGCTCCAGGGAGAAACCCAGGGCGTTGAGCCGGTCCTTCAGCATGCGGTTCTCACTCTTCAGCATGTTCAGCTCTCCACGGATCCcctggttctggtcctgtagcAAGAGCAGGGTGGATTCCACGTCTGCAGAGATGAGAGGAGTAGGGGCTTCCATCTCCTGGTCCTGTGGAGGCTTAGCCTCAGCAGTCTCCTCGCCCTCGCCTTCCTCTCTGGCTCTGCTCcccccatcctcttcctcctcctcgggCAGGCCTAGCTGGACACGGATGCCCCGGAGCTCTGTGCGCAGGTGGAGGATCTCCACGTCTTTGCTCTTGGCCAGGCCCAGCAGGTCCTTCACCCTGCTCTCCAGGACCGTCTTGTCGCTGAGCTGCCCGTTCGACCTGGACTTGCTCATACGGGACTCAGATTCAGTCACAGTCCGGCAGCGGACTCTCTTGGGCGGTGACAAGGCATCGGAGGGTCCGGAGAGCTTCCTGCTGGTGGTGCAAGTTCTGGAGCGTTCCCGTAGTCCCTCCCGCGATGAACCAAGCTCCTTCACCACAGAGGTGGTCCCACGCTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2467740 lncRNA upstream 52624 17136245 ~ 17136879 (+) True G2158464
TU2467701 lncRNA upstream 95994 17070687 ~ 17093509 (+) True G2158427
TU2467694 lncRNA upstream 125591 17063503 ~ 17063912 (+) True G2158420
TU2467554 lncRNA upstream 146524 16957456 ~ 17042979 (+) False G2158313
TU2467743 lncRNA downstream 5594 17196722 ~ 17197415 (+) True G2158467
TU2467735 lncRNA downstream 7331 17198459 ~ 17200589 (+) True G2158459
TU2467736 lncRNA downstream 9808 17200936 ~ 17202539 (+) True G2158460
TU2467741 lncRNA downstream 11779 17202907 ~ 17203208 (+) True G2158465
TU2467737 lncRNA downstream 13421 17204549 ~ 17205124 (+) True G2158461
XM_036967935.1 mRNA upstream 150801 16987866 ~ 17038702 (+) False LOC110509722
XM_021590800.2 mRNA downstream 199967 17391095 ~ 17394366 (+) False LOC110509731
XM_036967972.1 mRNA downstream 200033 17391161 ~ 17394366 (+) False LOC110509731
XM_036967971.1 mRNA downstream 200081 17391209 ~ 17394366 (+) True LOC110509731
LOC110509337 mRNA downstream 204722 17395850 ~ 17399424 (+) True LOC110509337
XM_021590803.2 mRNA downstream 209115 17400243 ~ 17406305 (+) False LOC110509732
TU2466780 other upstream 835838 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 2095554 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 3253684 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 3375533 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 3413369 13773747 ~ 13776134 (+) True G2154391
TU2470138 other downstream 1869415 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 1869415 19060543 ~ 19063907 (+) False LOC110509751
TU2470143 other downstream 1869415 19060543 ~ 19065772 (+) True LOC110509751
TU2470148 other downstream 1875050 19066178 ~ 19068784 (+) True LOC118945267
TU2470204 other downstream 1945541 19136669 ~ 19137568 (+) True LOC110509753

Expression Profile