RNA id: TU2467737


Basic Information

Item Value
RNA id TU2467737
length 576
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G2158461
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17204549 ~ 17205124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTGGAGAAGCCCAAAAGTGTGATGAGAAATCACAGAATCTGTCATAAGTTACACAATAGCTGTTTCTCTGCTTACCAAGCAGGAGCCGATACCAAAAAAACTCAAATCTAACCTGGGGACACTCTTTTCCCCTACATGCATATCAGTATCAAATTTAAGTGTTTAATTTGTGGTTACAGCGGGCATGTCCAATAGTGGCATTCATTCCAGACACCGTACACAAGCTGTGGAGCTTTGACATGAGAGCGAAAAGAcagagcgaggaggagaggagaatatgTTGCgtcagagaggcacagagagtcACACTGGCTATTGGGTGTGATGTAATAATGCATTATCATCATCAGATGTGTGGTACTGGTGTCAACCTCTTGTTCTCGAAGGGGGTTGTGGCGCCCTCTGCAGGATACGTCCAGAATCAACGCGAAGAAATCTCCTGCTGCAGTCCAGTCCAGCTAGGACCATTCTCACTCTCAGTGGCCTTCCCAAAtggacatactgtactgtagactcgGGTTTGAGTCTCTATCTCCCTGTGGAACCCTCTACACTTCGGTGGAGAAGAGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2467741 lncRNA upstream 1341 17202907 ~ 17203208 (+) True G2158465
TU2467736 lncRNA upstream 2010 17200936 ~ 17202539 (+) True G2158460
TU2467735 lncRNA upstream 3960 17198459 ~ 17200589 (+) True G2158459
TU2467743 lncRNA upstream 7134 17196722 ~ 17197415 (+) True G2158467
TU2467740 lncRNA upstream 67670 17136245 ~ 17136879 (+) True G2158464
TU2467780 lncRNA downstream 1335 17206459 ~ 17206679 (+) True G2158502
TU2467783 lncRNA downstream 10094 17215218 ~ 17215419 (+) True G2158505
TU2467784 lncRNA downstream 12565 17217689 ~ 17218042 (+) True G2158506
TU2467786 lncRNA downstream 15591 17220715 ~ 17220940 (+) True G2158508
TU2467787 lncRNA downstream 16437 17221561 ~ 17221818 (+) True G2158509
XM_036967935.1 mRNA upstream 165847 16987866 ~ 17038702 (+) False LOC110509722
XM_021590800.2 mRNA downstream 185971 17391095 ~ 17394366 (+) False LOC110509731
XM_036967972.1 mRNA downstream 186037 17391161 ~ 17394366 (+) False LOC110509731
XM_036967971.1 mRNA downstream 186085 17391209 ~ 17394366 (+) True LOC110509731
LOC110509337 mRNA downstream 190726 17395850 ~ 17399424 (+) True LOC110509337
XM_021590803.2 mRNA downstream 195119 17400243 ~ 17406305 (+) False LOC110509732
TU2467776 other upstream 13421 17189503 ~ 17191128 (+) True G2158499
TU2467775 other upstream 13451 17189344 ~ 17191098 (+) False G2158499
TU2466780 other upstream 850884 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 2110600 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 3268730 13933248 ~ 13935819 (+) True G2154512
TU2470138 other downstream 1855419 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 1855419 19060543 ~ 19063907 (+) False LOC110509751
TU2470143 other downstream 1855419 19060543 ~ 19065772 (+) True LOC110509751
TU2470148 other downstream 1861054 19066178 ~ 19068784 (+) True LOC118945267
TU2470204 other downstream 1931545 19136669 ~ 19137568 (+) True LOC110509753

Expression Profile