RNA id: TU2468271



Basic Information


Item Value
RNA id TU2468271
length 283
lncRNA type intronic
GC content 0.41
exon number 2
gene id G2158933
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17216904 ~ 17217264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagtcttggtgtctgtgtgtattggtgtctgtgtgtattggtgtttatgagtcttagtgtctgtgtgtattggtgtttatgagtcttggtgtctgtgtgtattggtgtttatgggtcttggtgtctgtgtgtatttgtgtctgtgtgtattggtgtttatgagtcttggtgtctgtgtgtattggtgtttatgagtcttggtgtctgtgtgtatttgtgtctgtgtgtattggtgtttatgagtcttggtgtctgtgtgtattggtgtttatgagtcttggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2468267 lncRNA downstream 10379 17206314 ~ 17206525 (-) True G2158929
TU2468264 lncRNA downstream 12402 17204081 ~ 17204502 (-) True LOC110509728
TU2468263 lncRNA downstream 14373 17201448 ~ 17202531 (-) True G2158925
TU2468262 lncRNA downstream 16315 17198445 ~ 17200589 (-) True specc1lb
TU2468261 lncRNA downstream 22058 17194629 ~ 17194846 (-) True G2158923
TU2468272 lncRNA upstream 1613 17218877 ~ 17219100 (-) True G2158934
TU2468273 lncRNA upstream 2837 17220101 ~ 17220333 (-) True G2158935
TU2468274 lncRNA upstream 8552 17225816 ~ 17226017 (-) True G2158936
TU2468276 lncRNA upstream 10375 17227639 ~ 17228092 (-) True G2158938
TU2468283 lncRNA upstream 22104 17239368 ~ 17239824 (-) True G2158945
XM_021590792.2 mRNA downstream 16112 17170684 ~ 17200792 (-) False specc1lb
XM_021590793.2 mRNA downstream 16112 17170684 ~ 17200792 (-) False specc1lb
XM_021590791.2 mRNA downstream 67645 17144252 ~ 17149259 (-) True adora2ab
XM_021590790.2 mRNA downstream 77294 17136250 ~ 17139610 (-) True LOC110509725
XM_036968328.1 mRNA downstream 81013 17094056 ~ 17135891 (-) True LOC110509723
XM_021590795.2 mRNA upstream 123497 17340761 ~ 17383473 (-) True LOC110509730
XM_021590806.2 mRNA upstream 202015 17419279 ~ 17425513 (-) True LOC110509734
XM_021590807.2 mRNA upstream 211141 17428405 ~ 17477563 (-) False LOC110509735
XM_021590808.2 mRNA upstream 211141 17428405 ~ 17477564 (-) False LOC110509735
XM_021590809.2 mRNA upstream 211141 17428405 ~ 17477564 (-) False LOC110509735
TU2467320 other downstream 570307 16643681 ~ 16646597 (-) True G2158111
TU2467297 other downstream 608898 16607625 ~ 16608006 (-) True G2158088
TU2466925 other downstream 793483 16421677 ~ 16423421 (-) True G2157743
TU2466897 other downstream 830859 16381190 ~ 16386045 (-) True G2157715
TU2464104 other downstream 2985898 14227820 ~ 14231006 (-) True G2155120
TU2470823 other upstream 2059004 19276268 ~ 19277006 (-) True LOC110509757
TU2471632 other upstream 2767281 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 2865881 20083145 ~ 20083618 (-) True G2162127
TU2471773 other upstream 2870966 20088230 ~ 20093660 (-) True LOC110509788
TU2472094 other upstream 3091925 20309189 ~ 20309802 (-) False G2162405

Expression Profile