RNA id: TU2469220



Basic Information


Item Value
RNA id TU2469220
length 418
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G2159860
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18204200 ~ 18204646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacttcaacctacctttgtaacccaactttaggtatttgtaaacgttaataagcgatcaaattgatcactgggcgatctgtattcaatagcagctactcaagaaaacgatgtcctttgtctctcttccaaaatcgattgctgtatgctggacgaaatgaaggatctatttgtcattacacaaaggatttttgtcaatgaaaatgacgtttttgcaagctccctgctatatatttttgcttgcaataaacaattcagagactggcggattaatacttttctgtggtttttgtgaccaggtttttcttgggatttcgcttgctgttcacgttctgttatagtcacagacattatttaaccagttttagaaacttcagagtgttttctatccacacatactaatcatatgcatatactata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2469190 lncRNA downstream 22817 18181018 ~ 18181383 (-) True G2159830
TU2469188 lncRNA downstream 26247 18177740 ~ 18177953 (-) True G2159828
TU2469187 lncRNA downstream 27458 18176491 ~ 18176742 (-) True G2159827
TU2469146 lncRNA downstream 56724 18147232 ~ 18147476 (-) True G2159786
TU2469143 lncRNA downstream 58981 18144773 ~ 18145219 (-) True G2159783
TU2469378 lncRNA upstream 52687 18257333 ~ 18280982 (-) True G2160008
TU2469445 lncRNA upstream 136196 18340842 ~ 18343942 (-) True G2160075
TU2469473 lncRNA upstream 180693 18385339 ~ 18386926 (-) True G2160098
TU2469766 lncRNA upstream 238840 18443486 ~ 18443718 (-) True G2160377
TU2469767 lncRNA upstream 240593 18445239 ~ 18445452 (-) True G2160378
XM_036967198.1 mRNA downstream 403451 17676432 ~ 17800749 (-) False LOC110509738
XM_036967199.1 mRNA downstream 403451 17676432 ~ 17800749 (-) True LOC110509738
XM_021590813.2 mRNA downstream 606649 17517089 ~ 17597551 (-) True LOC110509737
XM_036967304.1 mRNA downstream 726636 17431441 ~ 17477564 (-) True LOC110509735
XM_021590812.2 mRNA downstream 733079 17431441 ~ 17471121 (-) False LOC110509735
XM_036968040.1 mRNA upstream 293286 18497932 ~ 18722649 (-) True LOC110509743
XM_021590829.2 mRNA upstream 582200 18786846 ~ 18800442 (-) False LOC110509746
XM_021590824.2 mRNA upstream 582200 18786846 ~ 18800444 (-) False LOC110509746
XM_021590825.2 mRNA upstream 582200 18786846 ~ 18800444 (-) False LOC110509746
XM_021590826.2 mRNA upstream 582200 18786846 ~ 18800444 (-) False LOC110509746
TU2467320 other downstream 1557603 16643681 ~ 16646597 (-) True G2158111
TU2467297 other downstream 1596194 16607625 ~ 16608006 (-) True G2158088
TU2466925 other downstream 1780779 16421677 ~ 16423421 (-) True G2157743
TU2466897 other downstream 1818155 16381190 ~ 16386045 (-) True G2157715
TU2464104 other downstream 3973194 14227820 ~ 14231006 (-) True G2155120
TU2470823 other upstream 1071622 19276268 ~ 19277006 (-) True LOC110509757
TU2471632 other upstream 1779899 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 1878499 20083145 ~ 20083618 (-) True G2162127
TU2471773 other upstream 1883584 20088230 ~ 20093660 (-) True LOC110509788
TU2472094 other upstream 2104543 20309189 ~ 20309802 (-) False G2162405

Expression Profile