RNA id: TU2470013


Basic Information

Item Value
RNA id TU2470013
length 2042
lncRNA type read_through
GC content 0.46
exon number 3
gene id G2160614
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18766145 ~ 18902632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtggaaacgcctttatgcgcaaatatcgatataataaccatcatatccaATTCAACTTGGAGTCACGCAATTATATGGTGTATGGTCTCACTAtggctatttttttattttacctttatttaaccacgtaggccagctgagaacaagttctcatttacaactgcgacctgaccaagacaaagcaaagcagtgcgacaaaaacaacacataaTTAATTACACATGGtataaacatacagtcaataacacaatagaaaagtatacatacagtgtgtgcaaatgaggtaagttgaggaaggtaaggcaataaataggccatagtggcaaaataattacaatttagcaattaaacactggagtgatagatatgcagaagatgaatgtacaagtagagatactggggtgcaaaggagcaacaacaaaaaaataacagtatgCGGATGAGGTAGCTGGATgagttatttacagatgggctatgtacagttgcagtgatctgtgagctgctctgacagctgatgcttaaagttagagagggagatattagtctccagcttcagtgatttttgcagttcgttccagttattggcagcagagaactggaaggaaaggcggccaaaggaggaattggctttgggggtgaccagtgaaatatacctgctggaccgtgtgctacgggtgggtgctgctatggtgagcaatgagctgagataaggcggggctttacctagcaaagacgtatagatgacctagagccagtgggtttggcgacgaatatgaagcgagggccagccaacgaaagcgtacaggtcgcagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagactgcatccaattttctgagtagagtgttggaggctatattgtaaatgacatcgccgaagtcaaggatcggtaggatagtcagttttacgagggtgttaGGCAGCATgactgaaggatgctttgttgcgaaataggaagccgattctagatttaattttggattggagatgcttaatgtgagtctgaaagtagagtttacaatctaaccagacatctaagtatttgtagttgtccacatattctaagtcagaacagtccagagtagtgatgctggacgggcgggtaggtgcgggcagcgatcagttgaaaagcatgcatctagttttacttgcatttaagagcagttggaggccacggaaggagagttcgtctggaggttagttaacacagtGTGGAGCAAGAGAGGAAAGGATGAAAAAGATTATAAAGGAGGAAAAATGTCAaaacagatggagaaagaggaaagagataAAAGCAGAAACAGGAAAAGACACAAAAaggtgttttctttatttgttgTGTCAGACTGTTGTGCCCTTAACACAGGGCTTCACCAACACCTACAGTGGGACTGTGACACTccacaatagtgtgtgtgtgtgcgtgtgtgtttggttgAGTGGACAAGGCTTGAGCGGGGGGAGGGACAGTcactttttctctttctcctcttgaTGTCTCCAGGCTGGCTTACTTCTTAGCTTTGCCCTGGGCAGCTACAGCCTCCATGGCCTTCTTCACAGTCTCAGCGTCTCCCAGGAAAGCCATGGGCTTGACGGGCTTCAGGTTTGCATCCAGCTCGTACACAATGGGGATACCTGTTGGCAGGTTCAACTCCATGATGGCAGCGTCTGACATGCCCTAAGTGCTTGACAATTCCGCGGAGGCTGTTGCCGTGGGCAGCGATGATGACATTCTTGCCAGCCTTGATCTCAGGTACGATGACATCGTTCCAGTAGGGCAGGGCACGGGCAATAGTGTCTTTCAGGGACTCACATGTGGGCAGCTCACCGGGCTTCAGGCCCTTGTAGCGCCTTGACTGGTGGGAGGACAGAACAGCATGTTGGGTTACACTGCACAAATGTATCATCACAAAAGCAGGTATGATGTAACATCCTAGAGGGCTGCAAATGAAACCTGGCAAAGCCTACGTAGTACCTCAAGCAGTACATGTCAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2470032 lncRNA upstream 7913 18796984 ~ 18797824 (+) True G2160626
TU2469720 lncRNA upstream 78680 18726857 ~ 18727057 (+) True G2160332
TU2469709 lncRNA upstream 89801 18715703 ~ 18715936 (+) True G2160321
TU2469694 lncRNA upstream 110580 18694898 ~ 18695157 (+) True G2160306
TU2469523 lncRNA upstream 347375 18458126 ~ 18458362 (+) True G2160145
TU2470216 lncRNA downstream 242187 19089092 ~ 19089358 (+) True G2160789
TU2470223 lncRNA downstream 250404 19097309 ~ 19097687 (+) True G2160796
TU2470225 lncRNA downstream 256294 19103199 ~ 19103426 (+) True G2160798
TU2470243 lncRNA downstream 279334 19126239 ~ 19126465 (+) True G2160816
TU2470245 lncRNA downstream 283409 19130314 ~ 19130530 (+) True G2160818
XM_036967296.1 mRNA upstream 21785 18766479 ~ 18783952 (+) True LOC110509745
XM_021590817.2 mRNA upstream 363544 18392939 ~ 18442193 (+) True si:dkey-1d7.3
XM_036967638.1 mRNA upstream 424797 18288740 ~ 18380940 (+) False LOC110509741
XM_021590833.2 mRNA downstream 6365 18853270 ~ 18856153 (+) True LOC110509749
XM_036967316.1 mRNA downstream 115184 18962089 ~ 19065920 (+) False LOC110509751
XR_005040348.1 mRNA downstream 115184 18962089 ~ 19065920 (+) False LOC110509751
XR_005040349.1 mRNA downstream 115184 18962089 ~ 19065920 (+) False LOC110509751
XR_005040350.1 mRNA downstream 115184 18962089 ~ 19065920 (+) False LOC110509751
TU2467776 other upstream 1614609 17189503 ~ 17191128 (+) True G2158499
TU2467775 other upstream 1614639 17189344 ~ 17191098 (+) False G2158499
TU2466780 other upstream 2452072 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 3711788 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 4869918 13933248 ~ 13935819 (+) True G2154512
TU2470138 other downstream 213638 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 213638 19060543 ~ 19063907 (+) False LOC110509751
TU2470143 other downstream 213638 19060543 ~ 19065772 (+) True LOC110509751
TU2470148 other downstream 219273 19066178 ~ 19068784 (+) True LOC118945267
TU2470204 other downstream 289764 19136669 ~ 19137568 (+) True LOC110509753

Expression Profile