RNA id: TU2470216


Basic Information

Item Value
RNA id TU2470216
length 267
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2160789
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19089092 ~ 19089358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accataccccgttcaaacaCACAATATTTGGTCTTGCCCATTTACTCtctcaatggcacacatacacaatccatgtctcaattgtctcaaggcttaaaaaaacttatttaacctgtatcctccccttcatctacagattgaagtgcatttaacaagtgaaatcaataagggatcatagctttcacctggattcacctggtcagtctgtcatggaaagagcaggtgttcttaatgttttgtacactcagtgtatactgtatataccga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2470017 lncRNA upstream 186460 18778034 ~ 18902632 (+) False G2160614
TU2470015 lncRNA upstream 242187 18775228 ~ 18846905 (+) False G2160614
TU2470012 lncRNA upstream 242187 18805737 ~ 18846905 (+) False G2160614
TU2470013 lncRNA upstream 242187 18805737 ~ 18846905 (+) True G2160614
TU2470016 lncRNA upstream 246290 18766145 ~ 18842802 (+) False G2160614
TU2470223 lncRNA downstream 7951 19097309 ~ 19097687 (+) True G2160796
TU2470225 lncRNA downstream 13841 19103199 ~ 19103426 (+) True G2160798
TU2470243 lncRNA downstream 36881 19126239 ~ 19126465 (+) True G2160816
TU2470245 lncRNA downstream 40956 19130314 ~ 19130530 (+) True G2160818
TU2470250 lncRNA downstream 50257 19139615 ~ 19139830 (+) True G2160823
LOC118945267 mRNA upstream 21135 19066137 ~ 19067957 (+) False LOC118945267
XM_036967316.1 mRNA upstream 23172 18962089 ~ 19065920 (+) False LOC110509751
XR_005040348.1 mRNA upstream 23172 18962089 ~ 19065920 (+) False LOC110509751
XR_005040349.1 mRNA upstream 23172 18962089 ~ 19065920 (+) False LOC110509751
XR_005040350.1 mRNA upstream 23172 18962089 ~ 19065920 (+) False LOC110509751
XM_021590837.2 mRNA downstream 47070 19136428 ~ 19138160 (+) False LOC110509753
XM_021590212.2 mRNA downstream 80710 19170068 ~ 19204571 (+) False c6
NM_001124621.1 mRNA downstream 95172 19184530 ~ 19204490 (+) True c6
trnac-gca-162 mRNA downstream 130006 19219364 ~ 19219434 (+) True trnac-gca-162
XM_021590219.2 mRNA downstream 137681 19227039 ~ 19249902 (+) False ghr
TU2470148 other upstream 20308 19066178 ~ 19068784 (+) True LOC118945267
TU2470138 other upstream 23320 19060543 ~ 19065772 (+) False LOC110509751
TU2470143 other upstream 23320 19060543 ~ 19065772 (+) True LOC110509751
TU2470142 other upstream 25185 19060543 ~ 19063907 (+) False LOC110509751
TU2467776 other upstream 1897964 17189503 ~ 17191128 (+) True G2158499
TU2470204 other downstream 47311 19136669 ~ 19137568 (+) True LOC110509753
TU2471142 other downstream 521531 19610889 ~ 19616511 (+) True LOC110509766
TU2471217 other downstream 652456 19741814 ~ 19752743 (+) True G2161635
TU2471264 other downstream 705902 19795260 ~ 19797774 (+) True G2161678
TU2472832 other downstream 2108560 21197918 ~ 21221181 (+) True LOC110509811

Expression Profile