RNA id: TU2470250


Basic Information

Item Value
RNA id TU2470250
length 216
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2160823
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19139615 ~ 19139830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCCAAACAATGTCTTATAAACAGACGGACAGCATACTGTATGAGTATGCACAATTAATTACTATtcaccattattttaccaggtaagttgactgagaacacattctcatttacagcaacaatctGAGGAAtcgttacaggggagaggaggggggatgaatgagccaatgtaaactgtggatgattaggtggctatgatggtatgagggccagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2470245 lncRNA upstream 9085 19130314 ~ 19130530 (+) True G2160818
TU2470243 lncRNA upstream 13150 19126239 ~ 19126465 (+) True G2160816
TU2470225 lncRNA upstream 36189 19103199 ~ 19103426 (+) True G2160798
TU2470223 lncRNA upstream 41928 19097309 ~ 19097687 (+) True G2160796
TU2470216 lncRNA upstream 50257 19089092 ~ 19089358 (+) True G2160789
TU2470254 lncRNA downstream 4611 19144441 ~ 19144690 (+) True G2160827
TU2470282 lncRNA downstream 38288 19178118 ~ 19178463 (+) True G2160854
TU2470284 lncRNA downstream 42047 19181877 ~ 19182519 (+) True G2160856
TU2470350 lncRNA downstream 149540 19289370 ~ 19295540 (+) True G2160912
TU2470401 lncRNA downstream 218017 19357847 ~ 19362158 (+) True G2160962
XM_021590837.2 mRNA upstream 1455 19136428 ~ 19138160 (+) False LOC110509753
LOC118945267 mRNA upstream 71658 19066137 ~ 19067957 (+) False LOC118945267
XR_005040350.1 mRNA upstream 73695 18962089 ~ 19065920 (+) False LOC110509751
XM_021590212.2 mRNA downstream 30238 19170068 ~ 19204571 (+) False c6
NM_001124621.1 mRNA downstream 44700 19184530 ~ 19204490 (+) True c6
trnac-gca-162 mRNA downstream 79534 19219364 ~ 19219434 (+) True trnac-gca-162
XM_021590219.2 mRNA downstream 87209 19227039 ~ 19249902 (+) False ghr
NM_001124731.1 mRNA downstream 87445 19227275 ~ 19249902 (+) True ghr
TU2470204 other upstream 2047 19136669 ~ 19137568 (+) True LOC110509753
TU2470148 other upstream 70831 19066178 ~ 19068784 (+) True LOC118945267
TU2470138 other upstream 73843 19060543 ~ 19065772 (+) False LOC110509751
TU2470143 other upstream 73843 19060543 ~ 19065772 (+) True LOC110509751
TU2470142 other upstream 75708 19060543 ~ 19063907 (+) False LOC110509751
TU2471142 other downstream 471059 19610889 ~ 19616511 (+) True LOC110509766
TU2471217 other downstream 601984 19741814 ~ 19752743 (+) True G2161635
TU2471264 other downstream 655430 19795260 ~ 19797774 (+) True G2161678
TU2472832 other downstream 2058088 21197918 ~ 21221181 (+) True LOC110509811
TU2473579 other downstream 2460588 21600418 ~ 21601052 (+) True G2163804

Expression Profile