RNA id: TU2471440


Basic Information

Item Value
RNA id TU2471440
length 643
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2161828
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19616642 ~ 19617284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCATCTGAAGACAAAGTATCCTCTATTGCTGGGGAAATGTTGACTATGACTATTACCAGTTTCTATACAAAGAGCAAGTATAGTCAGGTGTGACAAATTTAAAAACGTTTACAGTGATAAAGCAATTTGATTGGTTGTAAATGCGAGGTTCTCTTTTACTCATCATGGCAAAGTTGTATTTTGTGTTTGACATCAATATGTCTTTATATTAtactttctaatcgacctggcccgggtatcctggaaggatattgacctcattccatcagtagaggatgcctggttattctttaaaaagtgCTTTCATCAccgtcttaaataagcatgccccattcaaaaaatatagaaccaggaacagatattcctggttcactccagatctgactgcccttgaccagcacaaaaacatcctgtggcatactgcattagcatcgaatagcccccgcgatatgcaacttttcagggaagttaggaaccaatatacacaggcagttaggaaagcaaaggctagtttTTTCAAACATTAAATTTGCATCCTGAAGCTCAaattccaaaaagttctgggacactgtaaaatccatggagaataagagcacctcctcccagctgcccactgcactgaggctaggaaacactgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2471379 lncRNA downstream 81986 19533628 ~ 19534656 (-) True G2161780
TU2471347 lncRNA downstream 130182 19486164 ~ 19486460 (-) True G2161750
TU2470999 lncRNA downstream 169079 19447338 ~ 19447563 (-) True G2161444
TU2470997 lncRNA downstream 169906 19446190 ~ 19446736 (-) True G2161442
TU2470985 lncRNA downstream 177182 19439244 ~ 19439460 (-) True G2161430
TU2471443 lncRNA upstream 3702 19620986 ~ 19622577 (-) False G2161830
TU2471442 lncRNA upstream 4839 19622123 ~ 19622577 (-) True G2161830
TU2471444 lncRNA upstream 8073 19625357 ~ 19625860 (-) True G2161831
TU2471445 lncRNA upstream 8658 19625942 ~ 19626481 (-) True G2161832
TU2471446 lncRNA upstream 9254 19626538 ~ 19626973 (-) True G2161833
XM_036967847.1 mRNA downstream 5417 19599862 ~ 19611225 (-) True LOC110509765
XM_036967846.1 mRNA downstream 6962 19599862 ~ 19609680 (-) False LOC110509765
XM_036967849.1 mRNA downstream 6962 19599862 ~ 19609680 (-) False LOC110509765
LOC110509339 mRNA downstream 97742 19514805 ~ 19518900 (-) True LOC110509339
XM_021590846.2 mRNA downstream 107813 19502531 ~ 19508829 (-) False LOC110509760
XM_021590863.2 mRNA upstream 98779 19716063 ~ 19716692 (-) True pmchl
XM_021590867.2 mRNA upstream 121301 19738585 ~ 19785892 (-) True LOC100136307
XM_036968341.1 mRNA upstream 162772 19780056 ~ 19792894 (-) False LOC110509772
XM_036968340.1 mRNA upstream 169237 19786521 ~ 19792894 (-) False LOC110509772
XM_036968339.1 mRNA upstream 169241 19786525 ~ 19792894 (-) False LOC110509772
TU2470823 other downstream 339636 19276268 ~ 19277006 (-) True LOC110509757
TU2467320 other downstream 2970045 16643681 ~ 16646597 (-) True G2158111
TU2467297 other downstream 3008636 16607625 ~ 16608006 (-) True G2158088
TU2466925 other downstream 3193221 16421677 ~ 16423421 (-) True G2157743
TU2466897 other downstream 3230597 16381190 ~ 16386045 (-) True G2157715
TU2471632 other upstream 367261 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 465861 20083145 ~ 20083618 (-) True G2162127
TU2471773 other upstream 470946 20088230 ~ 20093660 (-) True LOC110509788
TU2472094 other upstream 691905 20309189 ~ 20309802 (-) False G2162405
TU2472087 other upstream 691961 20309245 ~ 20309802 (-) True G2162405

Expression Profile