RNA id: TU2471598


Basic Information

Item Value
RNA id TU2471598
length 311
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G2161978
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19955907 ~ 19956217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTTTCAGCTAGAGATTAGGTGCAGGATTTGTaatcttgcatgatgtctactttgatgctaattacaATTTTTGAATCTGAGAGTAATTAGAGCAGACTATAtaataaaagtcaccttgtcagagagagatttacatggtatcaaaacgtcatgccagggtaaacctacacaaaacacagcccttattttaagtgtttcaaAAATTCCCTATGGGAAGACTAATTGGAACGATTTCCCTGTTTGacagctaggttttatgggtattatgacacctccattgTGGGGCTCTATTGCTTCTTCCTGTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2471595 lncRNA downstream 3283 19952311 ~ 19952624 (-) True G2161975
TU2471589 lncRNA downstream 10827 19944805 ~ 19945080 (-) True G2161972
TU2471587 lncRNA downstream 13964 19941606 ~ 19941943 (-) True G2161970
TU2471586 lncRNA downstream 15521 19940140 ~ 19940386 (-) True G2161969
TU2471523 lncRNA downstream 73312 19882068 ~ 19882595 (-) True G2161908
TU2471619 lncRNA upstream 17656 19973873 ~ 19974155 (-) True G2161992
TU2471631 lncRNA upstream 28007 19984224 ~ 19984509 (-) True G2162004
TU2471641 lncRNA upstream 33262 19989479 ~ 19989868 (-) True G2162013
TU2471642 lncRNA upstream 33682 19989899 ~ 19990316 (-) True G2162014
TU2471722 lncRNA upstream 36240 19992457 ~ 19992675 (-) True G2162074
XM_036968089.1 mRNA downstream 5283 19946567 ~ 19950624 (-) True LOC110509780
XM_036968090.1 mRNA downstream 5284 19946567 ~ 19950623 (-) False LOC110509780
XM_021590205.2 mRNA downstream 50034 19882762 ~ 19905873 (-) True traf2
NM_001124393.2 mRNA downstream 52465 19882762 ~ 19903442 (-) False traf2
XR_005040396.1 mRNA downstream 115228 19838055 ~ 19840679 (-) True LOC110509775
XM_021590891.2 mRNA upstream 66911 20023128 ~ 20025908 (-) True LOC110509785
XM_036967984.1 mRNA upstream 94578 20050795 ~ 20063779 (-) False LOC110509787
XM_036967979.1 mRNA upstream 94578 20050795 ~ 20063782 (-) False LOC110509787
XM_036967980.1 mRNA upstream 94578 20050795 ~ 20063782 (-) False LOC110509787
XM_036967982.1 mRNA upstream 94578 20050795 ~ 20063782 (-) False LOC110509787
TU2470823 other downstream 678901 19276268 ~ 19277006 (-) True LOC110509757
TU2467320 other downstream 3309310 16643681 ~ 16646597 (-) True G2158111
TU2467297 other downstream 3347901 16607625 ~ 16608006 (-) True G2158088
TU2466925 other downstream 3532486 16421677 ~ 16423421 (-) True G2157743
TU2466897 other downstream 3569862 16381190 ~ 16386045 (-) True G2157715
TU2471632 other upstream 28328 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 126928 20083145 ~ 20083618 (-) True G2162127
TU2471773 other upstream 132013 20088230 ~ 20093660 (-) True LOC110509788
TU2472094 other upstream 352972 20309189 ~ 20309802 (-) False G2162405
TU2472087 other upstream 353028 20309245 ~ 20309802 (-) True G2162405

Expression Profile