RNA id: TCONS_00005314


Basic Information

Item Value
RNA id TCONS_00005314
length 1081
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_002869
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32657496 ~ 32663759 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAATTAGtgcaaatgttgttttgaagtcatacatgcgatttcagagcaaatattcaaAGTTTTCCTCAATGTTTTActgctgtaaatataaataagttgCCTTTGCAGAGCTGAAGAGGCCTCATGTCTGTCAGGTCTGAAGCCGCTTGGAAACCCGCATTGATGAGCTTCACCTTCACCGACGGCGCCAGAGGGAGACTCGCTGTTGAAGCGTATTGTTGTCATGAATTGTCGGTCAGAGGTGCTGGAGGTGTCTGTGGAAGGTCGGCAGGTGGATGAAGCCATGCTGGGCCTCCTGCACACGATCCTCCTGCACCGCAGCACGGGCAAATTTCACTACAAAAAGGAGGGCACCTACTCCATTGGCACTGTGGGCACTCAGGACGTGGACTGCGACTTCATAGACTTCACTTTCGTGCGAGTGTCTTCAGACGAGCTGGACAGGGTCATCAGGAAAGCGGTGGCCGAGTTTAAGGATGCGCTTGGCAATTCGGGCAGCGACGGCATGGGTCAGATCTCACTGGAGTTCTACCAGAAGAAGAAGTCACGCTGGCCCTTTTCAGACGAGTGCATCCCATGGGAAGTCTGGAGCATTAAGGTAAACGTGGTCAATTTGGCAAATGAACAGGAGCGTCAGATCTGCAGGGAGAAAGTTGGAGAGAAGCTCGGGGAGAAAGTCATCAACATCGTGGAGGTGATAAACCGGCACGAGTATCTCCCCAAAATGCCCACACAGTCTGAGGTAGACAACGTGTTCGATACCAGTCTGAAAGATGTCCAGCCGTACCTGTACAAGATCACGTACCAGATCACGGATTCGCTGGGCACATCAGTGAGCACCACCATGAGGAGGCTGATTAAAGACACGCTGGCCTTGTGAATAAACTCCTCCTGATTATCATCTTGTAATATAACAAAGTCACATTGCATTGCTCCTCAGTGGGATCTCGAATACATTCACTTGACTTTTCTGTATGATAATGGCATCTCTGCATCAGCTAATTGAAATATGCTTATTATTTAGTCGgatacttttgttgttgtttttataataaagttTAATTATGTTCTCAAAATTA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0000407 phagophore assembly site cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04140 Autophagy - animal
ko04136 Autophagy - other
ko04211 Longevity regulating pathway
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-051030-36 Predicted to be involved in autophagosome assembly. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be active in phagophore assembly site. Orthologous to human ATG101 (autophagy related 101).

Ensembl:

ensembl_id ENSDART00000126727

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006081 lncRNA downstream 66034 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005771 lncRNA downstream 406650 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006079 lncRNA downstream 406725 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA downstream 417768 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00006078 lncRNA downstream 572872 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00005772 lncRNA upstream 13051 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006082 lncRNA upstream 116121 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00006083 lncRNA upstream 231238 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006084 lncRNA upstream 494830 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005338 lncRNA upstream 953865 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00005311 mRNA downstream 17555 32613706 ~ 32639941 (-) True XLOC_002868
TCONS_00005310 mRNA downstream 17557 32613706 ~ 32639939 (-) False XLOC_002868
TCONS_00005307 mRNA downstream 46720 32534904 ~ 32610776 (-) False XLOC_002866
TCONS_00005306 mRNA downstream 98576 32534904 ~ 32558920 (-) False XLOC_002866
TCONS_00005305 mRNA downstream 98579 32534814 ~ 32558917 (-) False XLOC_002866
TCONS_00005315 mRNA upstream 145861 32809620 ~ 32851847 (-) True XLOC_002872
TCONS_00005316 mRNA upstream 191142 32854901 ~ 32877348 (-) False XLOC_002873
TCONS_00005317 mRNA upstream 193170 32856929 ~ 32880298 (-) False XLOC_002873
TCONS_00005318 mRNA upstream 202691 32866450 ~ 32877350 (-) True XLOC_002873
TCONS_00005319 mRNA upstream 217827 32881586 ~ 32890617 (-) True XLOC_002874
TCONS_00005308 other downstream 46727 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 46802 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 1552742 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2126239 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 2918388 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 713059 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 713242 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 713371 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 1368524 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1663503 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15782838_15784193.mRNA True 768 mRNA 0.49 2 CI01000304 15782727 ~ 15784193 (-)
bowfin (Amia calva) AMCG00016249 True 5631 mRNA 0.39 2 CM030122.1 13583044 ~ 13588973 (+)