RNA id: TU2472151



Basic Information


Item Value
RNA id TU2472151
length 210
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G2162461
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20385004 ~ 20385213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caatttaaaggcaagctaccaaatactaattgagtgcatgtaatcttctgatccactgggaatgtgatgaaagaaataaaagctgaaataaacaattctctctaatatcattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggactttttactaggattaaatgtcaggaattatgaaaaactgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2472119 lncRNA downstream 25398 20359382 ~ 20359606 (-) True G2162429
TU2472113 lncRNA downstream 49804 20334741 ~ 20335200 (-) True G2162423
TU2472108 lncRNA downstream 59927 20324851 ~ 20325077 (-) True G2162418
TU2472082 lncRNA downstream 80876 20303699 ~ 20304128 (-) True G2162401
TU2472070 lncRNA downstream 98877 20285868 ~ 20286127 (-) True G2162390
TU2472159 lncRNA upstream 6418 20391631 ~ 20391914 (-) True G2162469
TU2472221 lncRNA upstream 61492 20446705 ~ 20446911 (-) True G2162531
TU2472232 lncRNA upstream 69438 20454651 ~ 20455085 (-) True G2162542
TU2472234 lncRNA upstream 70067 20455280 ~ 20455587 (-) True G2162544
TU2472237 lncRNA upstream 74611 20459824 ~ 20460060 (-) True G2162547
XM_021590898.2 mRNA downstream 241242 20138956 ~ 20143762 (-) False lman2la
XM_021590899.2 mRNA downstream 241242 20138956 ~ 20143762 (-) True lman2la
XM_021590894.2 mRNA downstream 291309 20088225 ~ 20093695 (-) False LOC110509788
XM_021590893.2 mRNA downstream 292550 20088225 ~ 20092454 (-) False LOC110509788
XM_036967981.1 mRNA downstream 321221 20050795 ~ 20063783 (-) True LOC110509787
XM_021590905.2 mRNA upstream 376448 20761661 ~ 20772043 (-) True LOC110509794
XM_021590906.2 mRNA upstream 426523 20811736 ~ 20839531 (-) False LOC110509795
XM_021590908.2 mRNA upstream 426523 20811736 ~ 20869832 (-) True LOC110509795
XM_036967827.1 mRNA upstream 486259 20871472 ~ 20876271 (-) False LOC110509797
XM_021590910.2 mRNA upstream 486259 20871472 ~ 20878088 (-) False LOC110509797
TU2472112 other downstream 54866 20329748 ~ 20330138 (-) True G2162422
TU2472094 other downstream 75202 20309189 ~ 20309802 (-) False G2162405
TU2472087 other downstream 75202 20309245 ~ 20309802 (-) True G2162405
TU2471773 other downstream 291344 20088230 ~ 20093660 (-) True LOC110509788
TU2471779 other downstream 301386 20083145 ~ 20083618 (-) True G2162127
TU2473122 other upstream 585119 20970332 ~ 20976948 (-) True surf4
TU2473141 other upstream 759936 21145149 ~ 21146337 (-) True rabepk
TU2473694 other upstream 1211338 21596551 ~ 21597495 (-) True G2163913
TU2473704 other upstream 1227350 21612563 ~ 21612961 (-) True G2163923
TU2476609 other upstream 3155929 23541142 ~ 23546013 (-) True LOC110509827

Expression Profile