RNA id: TU2472824


Basic Information

Item Value
RNA id TU2472824
length 220
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2163091
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21157195 ~ 21157414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcataactattcacccctcccccaaagtcaatactttgtagagccaccttttgcagcaaatacagcttcaagtctcttggggtatgtttctataagcttggcacatctagccactgggatttttgcccattctcaaggcaaaactgctccagctccttcaagttggatgggttccgctggtgtacagcaatctttaagtcataccacagattctgaAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2472817 lncRNA upstream 9146 21147413 ~ 21148049 (+) True G2163084
TU2472815 lncRNA upstream 10819 21142884 ~ 21146376 (+) True G2163083
TU2472734 lncRNA upstream 24412 21127470 ~ 21132783 (+) True G2163023
TU2472788 lncRNA upstream 79254 21072597 ~ 21077941 (+) True G2163071
TU2472611 lncRNA upstream 183916 20972262 ~ 20973279 (+) True G2162904
TU2472826 lncRNA downstream 1834 21159248 ~ 21159473 (+) True G2163093
TU2472842 lncRNA downstream 18533 21175947 ~ 21176298 (+) True G2163104
TU2472845 lncRNA downstream 24865 21182279 ~ 21182565 (+) True G2163107
TU2472877 lncRNA downstream 86229 21243643 ~ 21243873 (+) True G2163139
TU2472878 lncRNA downstream 86478 21243892 ~ 21244404 (+) True G2163140
XM_021590926.2 mRNA upstream 19601 21133409 ~ 21137594 (+) True LOC100135840
XM_036967875.1 mRNA upstream 61020 21004255 ~ 21096175 (+) False dnm1a
XM_036968257.1 mRNA downstream 2712 21160126 ~ 21389662 (+) False LOC110509811
XM_036968259.1 mRNA downstream 40513 21197927 ~ 21389662 (+) False LOC110509811
XM_036968258.1 mRNA downstream 58542 21215956 ~ 21389662 (+) False LOC110509811
XM_036968260.1 mRNA downstream 152687 21310101 ~ 21389662 (+) False LOC110509811
XM_036968261.1 mRNA downstream 220026 21377440 ~ 21389662 (+) False LOC110509811
TU2471264 other upstream 1359421 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 1404452 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 1540684 19610889 ~ 19616511 (+) True LOC110509766
TU2470204 other upstream 2019627 19136669 ~ 19137568 (+) True LOC110509753
TU2470148 other upstream 2088411 19066178 ~ 19068784 (+) True LOC118945267
TU2472832 other downstream 40504 21197918 ~ 21221181 (+) True LOC110509811
TU2473579 other downstream 443004 21600418 ~ 21601052 (+) True G2163804
TU2475443 other downstream 1679657 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 1968366 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 2358208 23515622 ~ 23525331 (+) True LOC110509345

Expression Profile