RNA id: TU2473431


Basic Information

Item Value
RNA id TU2473431
length 320
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2163657
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21438183 ~ 21438502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2473424 lncRNA upstream 8149 21429697 ~ 21430034 (+) True G2163650
TU2473420 lncRNA upstream 9551 21428429 ~ 21428632 (+) True G2163646
TU2472938 lncRNA upstream 123064 21313355 ~ 21315119 (+) True G2163197
TU2472891 lncRNA upstream 178462 21259507 ~ 21259721 (+) True G2163153
TU2472889 lncRNA upstream 180297 21257615 ~ 21257886 (+) True G2163151
TU2473438 lncRNA downstream 6272 21444774 ~ 21445077 (+) True G2163664
TU2473575 lncRNA downstream 157593 21596095 ~ 21596411 (+) True G2163800
TU2473580 lncRNA downstream 163212 21601714 ~ 21602265 (+) True G2163805
TU2473592 lncRNA downstream 179329 21617831 ~ 21618098 (+) True G2163817
TU2473725 lncRNA downstream 194049 21632551 ~ 21632780 (+) True G2163944
XM_036968258.1 mRNA upstream 48521 21215956 ~ 21389662 (+) False LOC110509811
XM_036967702.1 mRNA downstream 232026 21670528 ~ 21708957 (+) True LOC110509813
XM_036967895.1 mRNA downstream 310778 21749280 ~ 21875071 (+) False pappaa
XM_036967896.1 mRNA downstream 310778 21749280 ~ 21875071 (+) False pappaa
XM_036967897.1 mRNA downstream 310778 21749280 ~ 21875071 (+) False pappaa
XR_005040326.1 mRNA downstream 525171 21963673 ~ 21974980 (+) True LOC118945260
TU2472832 other upstream 217002 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 1640409 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 1685440 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 1821672 19610889 ~ 19616511 (+) True LOC110509766
TU2470204 other upstream 2300615 19136669 ~ 19137568 (+) True LOC110509753
TU2473579 other downstream 161916 21600418 ~ 21601052 (+) True G2163804
TU2475443 other downstream 1398569 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 1687278 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 2077120 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 2347117 23785619 ~ 23791664 (+) True LOC110509837

Expression Profile