RNA id: TU2473704



Basic Information


Item Value
RNA id TU2473704
length 399
RNA type TUCP
GC content 0.45
exon number 1
gene id G2163923
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21612563 ~ 21612961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatgcagccaagaggcccatgatcactctggatgacctgcagcgatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccatgaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacaggaaagatggttaaaattgat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2473700 lncRNA downstream 8465 21603819 ~ 21604098 (-) True G2163919
TU2473697 lncRNA downstream 11192 21601119 ~ 21601371 (-) True G2163916
TU2473693 lncRNA downstream 16787 21594883 ~ 21595776 (-) True G2163912
TU2473662 lncRNA downstream 30776 21542412 ~ 21581787 (-) True G2163881
TU2473684 lncRNA downstream 33237 21578822 ~ 21579326 (-) True G2163903
TU2473708 lncRNA upstream 4745 21617706 ~ 21617934 (-) True G2163927
TU2473709 lncRNA upstream 6249 21619210 ~ 21619522 (-) True G2163928
TU2473724 lncRNA upstream 19061 21632022 ~ 21632240 (-) True G2163943
TU2474332 lncRNA upstream 155721 21768682 ~ 21768975 (-) True G2164540
TU2474334 lncRNA upstream 157123 21770084 ~ 21770294 (-) True G2164542
XR_005040529.1 mRNA downstream 87050 21519877 ~ 21525513 (-) True LOC118945362
XM_021590930.2 mRNA downstream 466069 21138218 ~ 21146494 (-) False rabepk
XM_021590929.2 mRNA downstream 466072 21138218 ~ 21146491 (-) False rabepk
XM_021590927.2 mRNA downstream 466153 21138218 ~ 21146410 (-) False rabepk
XM_021590928.2 mRNA downstream 466162 21138218 ~ 21146401 (-) False rabepk
XM_036967228.1 mRNA upstream 266666 21879627 ~ 22056689 (-) False LOC110509815
XM_036967227.1 mRNA upstream 266666 21879627 ~ 22337506 (-) False LOC110509815
XM_036968207.1 mRNA upstream 980640 22593601 ~ 22594656 (-) True LOC110509818
XM_021590941.2 mRNA upstream 1224093 22837054 ~ 22957768 (-) True LOC110509819
XM_021590942.2 mRNA upstream 1513649 23126610 ~ 23169638 (-) False LOC110509820
TU2473694 other downstream 15068 21596551 ~ 21597495 (-) True G2163913
TU2473141 other downstream 466226 21145149 ~ 21146337 (-) True rabepk
TU2473122 other downstream 635615 20970332 ~ 20976948 (-) True surf4
TU2472112 other downstream 1282425 20329748 ~ 20330138 (-) True G2162422
TU2472094 other downstream 1302761 20309189 ~ 20309802 (-) False G2162405
TU2476609 other upstream 1928181 23541142 ~ 23546013 (-) True LOC110509827
TU2477392 other upstream 2670589 24283550 ~ 24286383 (-) True LOC110509849
TU2477515 other upstream 2787888 24400849 ~ 24407043 (-) False LOC110509347
TU2477885 other upstream 2917229 24530190 ~ 24533150 (-) True LOC110509858
TU2478009 other upstream 3234192 24847153 ~ 24869810 (-) True G2167965

Expression Profile