RNA id: TU2473725


Basic Information

Item Value
RNA id TU2473725
length 230
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2163944
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21632551 ~ 21632780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcataGGTCTCTAAGcacaacatagcttcagtgtgtaaatcagctagaaagatgtgtcggcatcgagttattgcctctggccccctcccagttagggggagtgataagctctacagcagagtctcacaactcaatcgctggttgaaaactgttttctgcccctcccaaaagatagaatttgtagataattggccctctttctgggactcatccATAACAGGACTGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2473592 lncRNA upstream 14453 21617831 ~ 21618098 (+) True G2163817
TU2473580 lncRNA upstream 30286 21601714 ~ 21602265 (+) True G2163805
TU2473575 lncRNA upstream 36140 21596095 ~ 21596411 (+) True G2163800
TU2473438 lncRNA upstream 187474 21444774 ~ 21445077 (+) True G2163664
TU2473431 lncRNA upstream 194049 21438183 ~ 21438502 (+) True G2163657
TU2473754 lncRNA downstream 80423 21713203 ~ 21715005 (+) True G2163972
TU2473871 lncRNA downstream 114940 21747720 ~ 21748171 (+) True G2164087
TU2473900 lncRNA downstream 142821 21775601 ~ 21775818 (+) True G2164116
TU2473910 lncRNA downstream 156935 21789715 ~ 21790012 (+) True G2164126
TU2473915 lncRNA downstream 163317 21796097 ~ 21796303 (+) True G2164131
XM_036968258.1 mRNA upstream 242889 21215956 ~ 21389662 (+) False LOC110509811
XM_036967702.1 mRNA downstream 37748 21670528 ~ 21708957 (+) True LOC110509813
XM_036967895.1 mRNA downstream 116500 21749280 ~ 21875071 (+) False pappaa
XM_036967896.1 mRNA downstream 116500 21749280 ~ 21875071 (+) False pappaa
XM_036967897.1 mRNA downstream 116500 21749280 ~ 21875071 (+) False pappaa
XR_005040326.1 mRNA downstream 330893 21963673 ~ 21974980 (+) True LOC118945260
TU2473579 other upstream 31499 21600418 ~ 21601052 (+) True G2163804
TU2472832 other upstream 411370 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 1834777 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 1879808 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 2016040 19610889 ~ 19616511 (+) True LOC110509766
TU2475443 other downstream 1204291 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 1493000 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 1882842 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 2152839 23785619 ~ 23791664 (+) True LOC110509837
TU2477605 other downstream 2867628 24500408 ~ 24532154 (+) True LOC110509859

Expression Profile