RNA id: TU2473915



Basic Information


Item Value
RNA id TU2473915
length 207
lncRNA type intronic
GC content 0.57
exon number 1
gene id G2164131
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21796097 ~ 21796303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaaaaccactcacaaacttctacagatgcacaatcgagagcatcctgtcgggctgtatcaccgcctggtacggcaactgctccgcccacaaccgcaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2473910 lncRNA upstream 6085 21789715 ~ 21790012 (+) True G2164126
TU2473900 lncRNA upstream 20279 21775601 ~ 21775818 (+) True G2164116
TU2473871 lncRNA upstream 47926 21747720 ~ 21748171 (+) True G2164087
TU2473754 lncRNA upstream 81092 21713203 ~ 21715005 (+) True G2163972
TU2473725 lncRNA upstream 163317 21632551 ~ 21632780 (+) True G2163944
TU2473928 lncRNA downstream 22555 21818858 ~ 21819068 (+) True G2164144
TU2473933 lncRNA downstream 32058 21828361 ~ 21828707 (+) True G2164149
TU2473940 lncRNA downstream 38396 21834699 ~ 21834926 (+) True G2164156
TU2473948 lncRNA downstream 49398 21845701 ~ 21846044 (+) True G2164164
TU2473953 lncRNA downstream 61402 21857705 ~ 21858710 (+) True G2164169
XM_036967702.1 mRNA upstream 87140 21670528 ~ 21708957 (+) True LOC110509813
XM_036968260.1 mRNA upstream 406435 21310101 ~ 21389662 (+) False LOC110509811
XR_005040326.1 mRNA downstream 167370 21963673 ~ 21974980 (+) True LOC118945260
XM_021590939.2 mRNA downstream 189462 21985765 ~ 21990241 (+) True trim32
XM_021590949.2 mRNA downstream 1515333 23311636 ~ 23325364 (+) False LOC110509823
XM_036968171.1 mRNA downstream 1521454 23317757 ~ 23325364 (+) False LOC110509823
XM_036968169.1 mRNA downstream 1521458 23317761 ~ 23325364 (+) True LOC110509823
TU2473579 other upstream 195045 21600418 ~ 21601052 (+) True G2163804
TU2472832 other upstream 574916 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 1998323 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 2043354 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 2179586 19610889 ~ 19616511 (+) True LOC110509766
TU2475443 other downstream 1040768 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 1329477 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 1719319 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 1989316 23785619 ~ 23791664 (+) True LOC110509837
TU2477605 other downstream 2704105 24500408 ~ 24532154 (+) True LOC110509859

Expression Profile