RNA id: TU2475432


Basic Information

Item Value
RNA id TU2475432
length 223
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2165617
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 22828800 ~ 22829022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcaatactttgtagagccaccttttgcagcaattacagttgtaagtctcttggggtatgtctctataagcttagcacatctagccactgggatttttgcccattcttcaaggcaaaactgctccagctccttcaagttggatgggttccgctggtgtacagcaatctttaagtcataccacagattctcaattgcattgaggtctgggctttgactaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2475402 lncRNA upstream 17014 22811577 ~ 22811786 (+) True G2165587
TU2475390 lncRNA upstream 22519 22805944 ~ 22806281 (+) True G2165575
TU2475375 lncRNA upstream 34329 22794201 ~ 22794471 (+) True G2165560
TU2475369 lncRNA upstream 40317 22788276 ~ 22788483 (+) True G2165554
TU2475185 lncRNA upstream 47969 22780615 ~ 22780831 (+) True G2165377
TU2475796 lncRNA downstream 294173 23123195 ~ 23125608 (+) True G2165972
TU2475838 lncRNA downstream 331050 23160072 ~ 23181710 (+) True G2166008
TU2475833 lncRNA downstream 352961 23181983 ~ 23191941 (+) True G2166007
TU2475850 lncRNA downstream 364013 23193035 ~ 23196885 (+) True G2166020
TU2475909 lncRNA downstream 431146 23260168 ~ 23261360 (+) True G2166066
XM_021590939.2 mRNA upstream 838559 21985765 ~ 21990241 (+) True trim32
XR_005040326.1 mRNA upstream 853820 21963673 ~ 21974980 (+) True LOC118945260
XM_036967895.1 mRNA upstream 953729 21749280 ~ 21875071 (+) False pappaa
XM_021590949.2 mRNA downstream 482614 23311636 ~ 23325364 (+) False LOC110509823
XM_036968171.1 mRNA downstream 488735 23317757 ~ 23325364 (+) False LOC110509823
XM_036968169.1 mRNA downstream 488739 23317761 ~ 23325364 (+) True LOC110509823
XR_005040484.1 mRNA downstream 550883 23379905 ~ 23382422 (+) True LOC118945326
XM_021590950.2 mRNA downstream 576981 23406003 ~ 23408940 (+) False LOC110509824
TU2473579 other upstream 1227748 21600418 ~ 21601052 (+) True G2163804
TU2472832 other upstream 1607619 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 3031026 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 3076057 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 3212289 19610889 ~ 19616511 (+) True LOC110509766
TU2475443 other downstream 8049 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 296758 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 686600 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 956597 23785619 ~ 23791664 (+) True LOC110509837
TU2477605 other downstream 1671386 24500408 ~ 24532154 (+) True LOC110509859

Expression Profile