RNA id: TCONS_00006082


Basic Information

Item Value
RNA id TCONS_00006082
length 305
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id XLOC_002871
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32779880 ~ 32780290 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATCATGACCTGTGAATCTCCCAGCCAGGTCACGTACAGCGTGCGACCCCTCAGAAAAGTCACAACCCCTGTGGTGCCACAGCGCAGGTTCTGTTCCAGACACATGCAGACCTGTTTGAAGGAGTGACACAAGGCTTCTCCTGCGTCCTGGCTGAACATTTCTTGCCTGACCAGATTAACATGCAGGTGATTGGCGGCGTAGTTGGCAGCGTCCACCCCGCCGTGACCATCAAACACGGCAAAGTAGGCCTGCTCTTCTTGATCCTGAAATAGTAAGTAACAGTGATTAAAAGGGTCATATTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005772 lncRNA downstream 101635 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006081 lncRNA downstream 188418 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005771 lncRNA downstream 529034 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006079 lncRNA downstream 529109 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA downstream 540152 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00006083 lncRNA upstream 114707 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006084 lncRNA upstream 378299 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005338 lncRNA upstream 837334 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006085 lncRNA upstream 882875 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005339 lncRNA upstream 1095841 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00005314 mRNA downstream 116121 32657496 ~ 32663759 (-) True XLOC_002869
TCONS_00005313 mRNA downstream 119143 32657496 ~ 32660737 (-) False XLOC_002869
TCONS_00005312 mRNA downstream 119164 32657496 ~ 32660716 (-) False XLOC_002869
TCONS_00005311 mRNA downstream 139939 32613706 ~ 32639941 (-) True XLOC_002868
TCONS_00005310 mRNA downstream 139941 32613706 ~ 32639939 (-) False XLOC_002868
TCONS_00005315 mRNA upstream 29330 32809620 ~ 32851847 (-) True XLOC_002872
TCONS_00005316 mRNA upstream 74611 32854901 ~ 32877348 (-) False XLOC_002873
TCONS_00005317 mRNA upstream 76639 32856929 ~ 32880298 (-) False XLOC_002873
TCONS_00005318 mRNA upstream 86160 32866450 ~ 32877350 (-) True XLOC_002873
TCONS_00005319 mRNA upstream 101296 32881586 ~ 32890617 (-) True XLOC_002874
TCONS_00005308 other downstream 169111 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 169186 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 1675126 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2248623 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 3040772 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 596528 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 596711 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 596840 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 1251993 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1546972 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

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