RNA id: TU2477598


Basic Information

Item Value
RNA id TU2477598
length 230
lncRNA type intronic
GC content 0.41
exon number 1
gene id G2167602
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 24499728 ~ 24499957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcctatgacggtgccacgttgaaagtcactgagctattcagtaaggccattctactgccaatgtttgtctatggagattggctgtgtgtttaatttatacacctgtcagcaactggtgtgactgaaattgccaaatccactaatttgaaggggtgtccacatacttttgtatatgtagtgtgtatatTCTGACTCTGTCCCTGTGATAGAGAACTAAACTCCACTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2477595 lncRNA upstream 4671 24492720 ~ 24495057 (+) True G2167599
TU2477590 lncRNA upstream 12139 24487386 ~ 24487589 (+) True G2167594
TU2477583 lncRNA upstream 22729 24476778 ~ 24476999 (+) True G2167587
TU2477569 lncRNA upstream 32675 24466739 ~ 24467053 (+) True G2167573
TU2477560 lncRNA upstream 44695 24454758 ~ 24455033 (+) True G2167564
TU2477599 lncRNA downstream 50 24500007 ~ 24500248 (+) True G2167603
TU2477639 lncRNA downstream 38725 24538682 ~ 24539117 (+) True G2167634
TU2477640 lncRNA downstream 39424 24539381 ~ 24539617 (+) True G2167635
TU2477642 lncRNA downstream 40651 24540608 ~ 24540835 (+) True G2167637
TU2477643 lncRNA downstream 41039 24540996 ~ 24541246 (+) True G2167638
XM_021591015.2 mRNA upstream 67040 24410298 ~ 24432688 (+) False LOC110509856
XM_021591017.2 mRNA upstream 67040 24410298 ~ 24432688 (+) False LOC110509856
XM_021591019.2 mRNA upstream 67040 24410300 ~ 24432688 (+) True LOC110509856
XM_021590983.2 mRNA upstream 380846 24059336 ~ 24118882 (+) True LOC110509844
XM_021590981.2 mRNA upstream 453865 24042927 ~ 24045863 (+) True LOC110509843
XR_002471493.2 mRNA downstream 404 24500361 ~ 24532163 (+) False LOC110509859
XM_021591026.2 mRNA downstream 78648 24578605 ~ 24591900 (+) True LOC110509861
XM_036968147.1 mRNA downstream 133344 24633301 ~ 24642099 (+) False si:ch211-114l13.9
XM_036968148.1 mRNA downstream 133344 24633301 ~ 24642099 (+) False si:ch211-114l13.9
XM_036968150.1 mRNA downstream 133344 24633301 ~ 24642099 (+) True si:ch211-114l13.9
TU2476421 other upstream 708064 23785619 ~ 23791664 (+) True LOC110509837
TU2476233 other upstream 974397 23515622 ~ 23525331 (+) True LOC110509345
TU2475799 other upstream 1365438 23125780 ~ 23134290 (+) True G2165973
TU2475443 other upstream 1658247 22837071 ~ 22841481 (+) True G2165628
TU2473579 other upstream 2898676 21600418 ~ 21601052 (+) True G2163804
TU2477605 other downstream 451 24500408 ~ 24532154 (+) True LOC110509859
TU2478131 other downstream 699662 25199619 ~ 25202641 (+) True LOC110509866
TU2480075 other downstream 1963344 26463301 ~ 26464561 (+) True LOC110509876
TU2480105 other downstream 2029015 26528972 ~ 26532780 (+) True LOC110509877
TU2480665 other downstream 2822148 27322105 ~ 27324765 (+) False G2170458

Expression Profile