RNA id: TCONS_00005317


Basic Information

Item Value
RNA id TCONS_00005317
length 3279
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_002873
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32854901 ~ 32880298 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCAGTCGCCTGGATATGACGTCGTTGTGACCCGGAGAAGAGACCGCTGACGAGACACAAAGGATACAATGAGTCAGCGCTCGGAGAGACGGGGGATCCATGTGGACCAATCAGAACTGCTGTGTAAGAAAGGCTGTGGTTATTATGGCAATGCTGCCTGGCAGGGCCTGTGCTCCAAGTGCTGGAGGGACGAATATCAGAAAGCTCGGCAGAGGCAGATCCAGGATGACTGGGCTCTGGCAGAGAAGCTGCAGCGAGAAGAGGAGGCCGCTTATGTCAGCAGTCATAGTTCCTCACAGACCCAGCCTCCGCAGTCCCACTCCCAGCACTCTCTCGCCACCTTCTCCAAATTCGAGGAGAAGAAAACCAACGAGAAAACCCGAAAGGTCACCACTGTAAAGAAGTTCTTCAGCCCCTCCTCACGTACAGCCCCCAAAAAAGAGAGCCATGAGGCAAAAACGCCCAGTCCGTCCATCACCCGTCAGTCCAGCATCGAGACCGATCGCGTGTCACGAGACTTTGTGGAGTTCCTCAAGACCTTGCATAAGCCTGGCAGAGAGATCCACAAACACAGTCGTGCATTTATTGACAGCATGGGGAATAAAAAGCAGGATCTCAGCGCTGAAGAACTGTCTGAATGTGTGCAAGACTTCTATCAGGGCATGTCTGACCGACTCTTGAATCATTTTAAAGGCTCCTCTGAGAAAGTGGACAGGGTGATGGATCAAGTGGAAAAATACATCATGACTCGACTCTACAAGAGCGTCTTCTGTCCAGAAACCTCAGATGATGAGAAAAAAGACCTGGCCACGCAGCACAGGATTAGAGCCTTACACTGGGTAACCATTCAGATGTTGTGTGTTCCTGTGGAAGAGGAGATTCCAGAAGTCTCTGATAGTGTAGTCAAAGCCATCACCGATATCATTGAGATGGACTCCAAGCGTGTGCCCCGGGATAAACTGGCGTGCATCACCAGTTGCAGCAAGCATATCTTTAATGCCATCAGGGTCACTAAGAACGAGCCAGCTTCTGCAGATGACTTCCTGCCCACCCTCATCTATATCGTACTGAAGGCAAACCCGCCACGACTGCAGTCCAACATCCAGTACATCACACGCTTCTGCAACCCCTCAAGACTCATGACAGGAGAGGATGGATATTACTTCACCAACCTGTGCTGTGCCGTTGCCTTCATAGAGAAGCTGGACGCCCAGTCATTAAATCTCAGCCCTGAGGATTTTGAGCGCTACATGTCAGGCCAGGCTTCTCCTCGAAGGCAAGACGATCCGGCAGGCTGGCCCCAAAGTGGCTCTCGTGTAAATCCAGTGCTCACTCAGATCCAACACAACCTCAGTGTCCTGTCCAGCCTGGAGAAAAGACAGCAGCAGGTCATCGAGGGGGCGCAGAGCCTGGAGGCGGAGCTGACCGAATGGCAGGAGAGCGTGGCCCGCGAGGTGCAGGAGATCCTGGAGCGATACCCGCTGGACATCAAACCACGCGCATCAGCGATCGATGCCGAAAACGTGGAGAACGACAGGCTGCCACCTCCACTTCAGCCACAAGTCTTTGCAGGTTAGCGTAGCATCATGTTCTGAGACGGGAAAAGCATGTTTCAAAACGCAACGGCTGCTCTCGAAACAAAATCTCCGCACTTACCATTCCATCTGCTTTATTTTAATGCTTATACAGTCGGCTGTTACGTATTTTATGCAAATGTATTCTTGTCACATTTGTGCAGCTGATCAAAAAAGGGCGAGAGTTCGGGAAGCTATAAAATATTTCTAGTCTAACTTTGATTTGATCTACCATTTTAAATCTTCAAGATAGCTGCTAATACGTcctcttaaatggatagttctcACCAAATTGAGATGTCGCTGTTCATTTAGTAATTCTCAGGCCATTTAAGATGTACAAAAGTTGAAAATTAAAGATTTGTTTGGTGAAACTGGGGTATTTGTGGATTCAGAAAATGCAAAGCAATGGTGAttagcactttgagagtcaaaacaaATACAGACACTAAAAGTAATAATGCAATTgaacaggtgtcaaagccagttcctggagggccaccgttctgcacagtttagtttcaatcctaattaaacacatctgatcaaactaattgagtccttcaggcatATTTGAAACCCACATGTAAGTgtattgaagcagggttggaagtAAACTGCAGAGCTGCCGCCCTCCAGgatctgagtttgacacctgtggcttagTGTATTGTCAGAATCTGCAGTTCTTTTGCCTGtatattacttttatttgtttgacTCTCAAAGCTGTAGActtgcattttcttttttaatcatcATAGTTTcagataaaaaatatttgaaatctgatctaataaataaaaaggtagcATCTTTTACAGCCTGAGGGGGAGTGAACATACAGCAAATTGGGTTGAACTATCTTTAAATATgattacagttttatttatgtGATCATAACACCACATATCAGCATCTCTAATGCACATTAGTCCTGTTCACTGTAGGGTGTTTCACCTTCCATGCCTTGTTGTGTGGGATGTTTGGGTAAAGGAGTGTTCGTATATGTATGTGTAAAATGTTTTGCTGCTTCTACTGTgtacttaaaaaatttaaatttaaacatcatCCAATTTTTGTGCTTTTAAGGGAATTAAAAGTCTCGGTACGCTCATTCTTAAACACTTGGTCCCCTAATTCAGTGTTTcacaaccacgttcctgaaggaccaccaacactgcatgttttggatgtctcctttgtcacatccagtacaggtctttcagtctctgctgatgatctggatcaggtgtgtttggtgaaggagacatggaaaatgtgctggtggtcctccaggaacatggttgagaaacacttacATGATTGGGGGAATGCAGAAGTTTTAGCAACAAACACTATATTTACAAAGACATTTCTTTATTTGCGGATGAAAATGTAGGTGGATTTGCTCGGTTAAATTCATCTAGTGATTTTGTTGTACATAGTCCTTCTTCCTGAAGATGCAAATgactttgttttgctttttgatgTTTTTAGCGTTACATAAAACAAACTCAAAATGTGATTCAGCTTATTTTGAATACTGTCCCAGCTGTAATTGTAACAGGTACTTGGCAAAACACTATATTCATGTGGAAAATAATGGCTTTCACTCACAGTAATGATAAtgattgatgtctgtgtgtgatATTTTAACTGAACTGcattatttataatgtaaataaaaattgaGGTGTGTCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1486 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1).

Ensembl:

ensembl_id ENSDART00000138243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006082 lncRNA downstream 76639 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00005772 lncRNA downstream 178684 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006081 lncRNA downstream 265467 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005771 lncRNA downstream 606083 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006080 lncRNA downstream 617201 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00006083 lncRNA upstream 14699 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006084 lncRNA upstream 278291 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005338 lncRNA upstream 737326 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006085 lncRNA upstream 782867 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005339 lncRNA upstream 995833 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00005315 mRNA downstream 5082 32809620 ~ 32851847 (-) True XLOC_002872
TCONS_00005314 mRNA downstream 193170 32657496 ~ 32663759 (-) True XLOC_002869
TCONS_00005313 mRNA downstream 196192 32657496 ~ 32660737 (-) False XLOC_002869
TCONS_00005312 mRNA downstream 196213 32657496 ~ 32660716 (-) False XLOC_002869
TCONS_00005311 mRNA downstream 216988 32613706 ~ 32639941 (-) True XLOC_002868
TCONS_00005319 mRNA upstream 1288 32881586 ~ 32890617 (-) True XLOC_002874
TCONS_00005320 mRNA upstream 18235 32898533 ~ 32920690 (-) False XLOC_002876
TCONS_00005323 mRNA upstream 23043 32903341 ~ 33156789 (-) False XLOC_002876
TCONS_00005322 mRNA upstream 23043 32903341 ~ 33156789 (-) False XLOC_002876
TCONS_00005321 mRNA upstream 23043 32903341 ~ 33156789 (-) True XLOC_002876
TCONS_00005308 other downstream 246160 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 246235 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 1752175 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2325672 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 3117821 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 496520 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 496703 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 496832 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 1151985 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1446964 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15882316_15888812.mRNA True 2396 mRNA 0.48 9 CI01000304 15881682 ~ 15888812 (-)