Item | Value |
---|---|
RNA id | TCONS_00005318 |
length | 634 |
RNA type | mRNA |
GC content | 0.54 |
exon number | 4 |
gene id | XLOC_002873 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007121.7 |
NCBI id | CM002894.2 |
chromosome length | 45420867 |
location | 32854901 ~ 32880298 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0008150 | biological_process | biological_process |
GO:0005575 | cellular_component | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
ko04131 | Membrane trafficking |
id | description |
---|---|
ZDB-GENE-040426-1486 | Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1). |
ensembl_id | ENSDART00000133421 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00006082 | lncRNA | downstream | 86160 | 32779880 ~ 32780290 (-) | True | XLOC_002871 |
TCONS_00005772 | lncRNA | downstream | 188205 | 32676810 ~ 32678245 (-) | True | XLOC_002870 |
TCONS_00006081 | lncRNA | downstream | 274988 | 32584685 ~ 32591462 (-) | True | XLOC_002867 |
TCONS_00005771 | lncRNA | downstream | 615604 | 32229939 ~ 32250846 (-) | True | XLOC_002863 |
TCONS_00006080 | lncRNA | downstream | 626722 | 32229939 ~ 32239728 (-) | False | XLOC_002863 |
TCONS_00006083 | lncRNA | upstream | 17647 | 32894997 ~ 32896944 (-) | True | XLOC_002875 |
TCONS_00006084 | lncRNA | upstream | 281239 | 33158589 ~ 33164573 (-) | True | XLOC_002877 |
TCONS_00005338 | lncRNA | upstream | 740274 | 33617624 ~ 33618942 (-) | True | XLOC_002889 |
TCONS_00006085 | lncRNA | upstream | 785815 | 33663165 ~ 33664789 (-) | True | XLOC_002890 |
TCONS_00005339 | lncRNA | upstream | 998781 | 33876131 ~ 33880364 (-) | True | XLOC_002891 |
TCONS_00005315 | mRNA | downstream | 14603 | 32809620 ~ 32851847 (-) | True | XLOC_002872 |
TCONS_00005314 | mRNA | downstream | 202691 | 32657496 ~ 32663759 (-) | True | XLOC_002869 |
TCONS_00005313 | mRNA | downstream | 205713 | 32657496 ~ 32660737 (-) | False | XLOC_002869 |
TCONS_00005312 | mRNA | downstream | 205734 | 32657496 ~ 32660716 (-) | False | XLOC_002869 |
TCONS_00005311 | mRNA | downstream | 226509 | 32613706 ~ 32639941 (-) | True | XLOC_002868 |
TCONS_00005319 | mRNA | upstream | 4236 | 32881586 ~ 32890617 (-) | True | XLOC_002874 |
TCONS_00005320 | mRNA | upstream | 21183 | 32898533 ~ 32920690 (-) | False | XLOC_002876 |
TCONS_00005323 | mRNA | upstream | 25991 | 32903341 ~ 33156789 (-) | False | XLOC_002876 |
TCONS_00005322 | mRNA | upstream | 25991 | 32903341 ~ 33156789 (-) | False | XLOC_002876 |
TCONS_00005321 | mRNA | upstream | 25991 | 32903341 ~ 33156789 (-) | True | XLOC_002876 |
TCONS_00005308 | other | downstream | 255681 | 32542536 ~ 32610769 (-) | False | XLOC_002866 |
TCONS_00005309 | other | downstream | 255756 | 32567624 ~ 32610694 (-) | True | XLOC_002866 |
TCONS_00005293 | other | downstream | 1761696 | 31021356 ~ 31104754 (-) | True | XLOC_002857 |
TCONS_00005286 | other | downstream | 2335193 | 30531143 ~ 30531257 (-) | True | XLOC_002854 |
TCONS_00005276 | other | downstream | 3127342 | 29736186 ~ 29739108 (-) | True | XLOC_002847 |
TCONS_00005329 | other | upstream | 499468 | 33376818 ~ 33376941 (-) | True | XLOC_002883 |
TCONS_00005330 | other | upstream | 499651 | 33377001 ~ 33377086 (-) | True | XLOC_002884 |
TCONS_00005331 | other | upstream | 499780 | 33377130 ~ 33377214 (-) | True | XLOC_002885 |
TCONS_00005343 | other | upstream | 1154933 | 34032283 ~ 34033421 (-) | True | XLOC_002893 |
TCONS_00005358 | other | upstream | 1449912 | 34327262 ~ 34327394 (-) | True | XLOC_002902 |