RNA id: TU2485933


Basic Information

Item Value
RNA id TU2485933
length 2685
lncRNA type intronic
GC content 0.37
exon number 2
gene id G2175021
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31261189 ~ 31265370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCATTACAGAGACTTGCTTTTCCAGGCACTAATTTTGCTTCTCTTCTATAAATTGACTGCCATCTGCCGCAGAATGTTTGGCAAAAGAGGGCCTTCCTTCCCCTGCCAGCTCCGAGCTTTTTCTCGCTCTGAGAGACATGTGTGATCCTGGAACAAGGTTGACAGATATCCATGGATACCGACTGTGCTCTATTATAGTGGATTCATCGATCACTGTTCATGGCACATCTTAAGAAACTCCTGTTAGCCAGCATAATTATATTCATACAGGGGCGGATGTTTTAGCCTTAGTTTTATTCTGTAAATAACATCTGTTGTAGTATGGAGGAATAAATAGCATGAGTGATAGTGTGCAAAGAGGACCGGGGAAACagtgagtgagtaaagagaacagaggatacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagaggacagtggatacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagaggacagaggaaacaatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagtgaaacataatgagtgagtaaagagaacagaggatacataatgagtgagtaaagaggacagtgaaacatgagtgagtaaagaggacagtgaaacataatgagtgaataaagagaacagtggaaacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagaggacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagtgaaacataatgagtgagtaaagagaacagaggatacataatgagtgagtaaagaggacagtgaaacatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagtggaaacataatgagtgagtaaagacaaaagaggaaacataatgagtgagtaaagaggacagaggaaacacaatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagaggacagtgaaacatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagtgggaacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagacaacagtggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagaggacagaggaaacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagaggacagtgaaacatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaaaagaacagtgaaacataatgagtgagtaaagagaacagaggatacataatgagtgagtaaagaggacagtgaaacatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagtggaaacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagaggacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggatacataatgagtgagtaaataGGACAGTGAaacatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagtggaaacataatgagtgagtaaagacaaaagaggaaacataatgagtgagtaaagaggacagaggaaacacaatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagaggacagtgaaacatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagtggaaacataatgagtgagtaaagacaacagaggaaacataatgagtgagtaaagaggacagtgaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagacaacagtggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagacaacggaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagagaacagaggaaacataatgagtgagtaaagaggacagtgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2485921 lncRNA downstream 28647 31232339 ~ 31232542 (-) True G2175011
TU2485898 lncRNA downstream 55874 31201618 ~ 31205315 (-) True G2174989
TU2485890 lncRNA downstream 77779 31183131 ~ 31183410 (-) True G2174981
TU2485882 lncRNA downstream 89390 31171497 ~ 31171799 (-) True G2174973
TU2485878 lncRNA downstream 97782 31163184 ~ 31163407 (-) True G2174969
TU2485967 lncRNA upstream 74184 31339554 ~ 31370979 (-) False G2175050
TU2485968 lncRNA upstream 74184 31339554 ~ 31372998 (-) True G2175050
TU2485966 lncRNA upstream 75805 31341175 ~ 31374662 (-) True G2175049
TU2485991 lncRNA upstream 133048 31398418 ~ 31403881 (-) True G2175071
TU2486021 lncRNA upstream 151219 31416589 ~ 31421495 (-) False G2175083
XM_021590305.2 mRNA downstream 52668 31207464 ~ 31208521 (-) True LOC110509415
XM_021590304.1 mRNA downstream 56552 31203593 ~ 31204637 (-) True LOC110509414
XM_036967363.1 mRNA downstream 70063 31060271 ~ 31191126 (-) True LOC110509413
XM_036967364.1 mRNA downstream 70064 31060271 ~ 31191125 (-) False LOC110509413
XR_005040442.1 mRNA downstream 397702 30845842 ~ 30863487 (-) True LOC110510023
XR_005040483.1 mRNA upstream 31882 31297252 ~ 31304030 (-) True LOC118945323
XR_005040343.1 mRNA upstream 293463 31558833 ~ 31560156 (-) True LOC118945266
XM_021590213.2 mRNA upstream 338724 31604094 ~ 31607229 (-) False tnfsf13
NM_001124671.1 mRNA upstream 339205 31604575 ~ 31607114 (-) False tnfsf13
XM_036967302.1 mRNA upstream 342890 31608260 ~ 31610410 (-) True LOC118945265
TU2485795 other downstream 254754 31003755 ~ 31006435 (-) False G2174894
TU2485796 other downstream 254754 31003755 ~ 31006435 (-) False G2174894
TU2485797 other downstream 254754 31004873 ~ 31006435 (-) True G2174894
TU2485309 other downstream 588088 30672590 ~ 30673101 (-) True G2174463
TU2485084 other downstream 948408 30307215 ~ 30312781 (-) True LOC110510010
TU2486088 other upstream 254682 31520052 ~ 31521188 (-) True G2175135
TU2486443 other upstream 337079 31602449 ~ 31687002 (-) False G2175418
TU2486453 other upstream 403964 31669334 ~ 31673189 (-) False G2175420
TU2486455 other upstream 403964 31669334 ~ 31673189 (-) False G2175420
TU2486456 other upstream 403964 31669334 ~ 31673189 (-) True G2175420

Expression Profile