RNA id: TU2486109


Basic Information

Item Value
RNA id TU2486109
length 231
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G2175156
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31541429 ~ 31541659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggttgaacagtctAGTAATAGGGGATGCAACAATTTCGGGAGCTCATTttaaaaagagagggtccagattgtctagcccggctgatttgtagttgtccagattttgcagctctttcagaacatccgctatctggatttgggtgaaggagaaatggtgggggctttggcgggttgctgtggagggtgccaggCAGGTAACCAGGTgggaagcatggccagccgtagagaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486103 lncRNA downstream 3800 31537407 ~ 31537629 (-) True G2175150
TU2486093 lncRNA downstream 12662 31528565 ~ 31528767 (-) True G2175140
TU2486092 lncRNA downstream 17688 31523525 ~ 31523741 (-) True G2175139
TU2486031 lncRNA downstream 95614 31424894 ~ 31445815 (-) True G2175084
TU2486028 lncRNA downstream 119934 31417319 ~ 31421495 (-) False G2175083
TU2486127 lncRNA upstream 2451 31544110 ~ 31544322 (-) True G2175170
TU2486123 lncRNA upstream 16011 31557670 ~ 31558772 (-) False G2175169
TU2486124 lncRNA upstream 16011 31557670 ~ 31558772 (-) True G2175169
TU2486138 lncRNA upstream 21725 31563384 ~ 31563683 (-) True G2175181
TU2486152 lncRNA upstream 29394 31571053 ~ 31571277 (-) True G2175193
XR_005040483.1 mRNA downstream 237399 31297252 ~ 31304030 (-) True LOC118945323
XM_021590305.2 mRNA downstream 332908 31207464 ~ 31208521 (-) True LOC110509415
XM_021590304.1 mRNA downstream 336792 31203593 ~ 31204637 (-) True LOC110509414
XM_036967363.1 mRNA downstream 350303 31060271 ~ 31191126 (-) True LOC110509413
XM_036967364.1 mRNA downstream 350304 31060271 ~ 31191125 (-) False LOC110509413
XR_005040343.1 mRNA upstream 17174 31558833 ~ 31560156 (-) True LOC118945266
XM_021590213.2 mRNA upstream 62435 31604094 ~ 31607229 (-) False tnfsf13
NM_001124671.1 mRNA upstream 62916 31604575 ~ 31607114 (-) False tnfsf13
XM_036967302.1 mRNA upstream 66601 31608260 ~ 31610410 (-) True LOC118945265
XM_021591302.2 mRNA upstream 68884 31610543 ~ 31613567 (-) True LOC110510028
TU2486088 other downstream 20241 31520052 ~ 31521188 (-) True G2175135
TU2485795 other downstream 534994 31003755 ~ 31006435 (-) False G2174894
TU2485796 other downstream 534994 31003755 ~ 31006435 (-) False G2174894
TU2485797 other downstream 534994 31004873 ~ 31006435 (-) True G2174894
TU2485309 other downstream 868328 30672590 ~ 30673101 (-) True G2174463
TU2486443 other upstream 60790 31602449 ~ 31687002 (-) False G2175418
TU2486453 other upstream 127675 31669334 ~ 31673189 (-) False G2175420
TU2486455 other upstream 127675 31669334 ~ 31673189 (-) False G2175420
TU2486456 other upstream 127675 31669334 ~ 31673189 (-) True G2175420
TU2486556 other upstream 180293 31721952 ~ 31726394 (-) True G2175503

Expression Profile