RNA id: TU2486498


Basic Information

Item Value
RNA id TU2486498
length 2595
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2175451
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31638999 ~ 31642137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatcagtcagaatgtcactccctgaccttagagaccCTTTTTATATGTCTctctttggtttggtcagggtgtgatttggggtgggtattctatgttctattatttgtatttttatgtttggccgggtagggttctcaatcagtcagaatgtcactccctgaccttagagaccCTTTTTATATGTCTctctttggtttggtcagggtgtgatttggggtgggtattctatgttctattatttgtatttttatgtttggccgggtagggttctcaatcagggacagctgcctatcgttgtctctgattgagaaccatacttaggtagccctttcccacctgtctttgtgggaagttgactttgtttatagCCTTTAGTGGCATGGTTTGTggtgtagtgtttattgttttgttcggcgtaTTTTCTAATAAAAAAtcaaatgtacgctcaccacgctgcaccttggtatAGTTCTTTCAACGGCCGTGACACAGAATCATCATTTATGTCCCTGCCCCCAAATATAACACCTCCCACCAGTCTAAATCCTGATCGCCCTTAGGTCCTGTGCATTTATTTGCATCTTTTCCAACATATAGAAATATTTTTTCACAGGCTGATGACAGAGTACGcgagtgtgtacatgtgtttctgTTGTGTTGTATGTCAGTGTGCTCACCCATCATTTGTCCACTGCTAAAAGAGTTCCTAACTTCCTATGTCTAAAATGATAGTCTCATCAATTCAAacaccccactgggcacagacgtcagttcaacgtctagttttgagttgcatttggttgagttgtcaaataGTGTGAATTCAAGTTTAAATCATCAACAACAATGGCACCCTGTCATTGGATTGAGGTTAAAggttgggtgaaaaaaagacgATATTCCCCGACATTGATTACTTTTTACAAATCATTGATTATAACATTGATTATTTTGGAAAttacaacgttgattcaaccggtttttgcccagtgggactTGACATCACTCTGCTACcaatctctctgtctgactcagtCCCAGTGAGACTGAACACAGACAATATTAAGGGGTGAACATTGCACTTTGAGGACAGCGGAATTCTTGATGTAAAGGTTATGATTTGCATGTTATCTGGCCtcatttaaatgtttttgttgCTAAAACAAAGCATCGTAACACATTAAAATACTGCTAGTTTACCACAGTGGGTTCTACCCTGTGTCTCAGGCTGAGTAGGAATGATCTACTGTGCCTCTCATTATgtggtccacactccagtcttTAATGAAGGAGTAAAGAGGTTCTTCCAAACAAGCAGGGAAAGCCTTGGTTTTAATTGTCATTGACGCAGAAATGGTTTGATTTGGAGGACAATACACATCACATGGACACAGACCATGTCAGCGGGCTGCAAACAGTGAATAAAGCGTAGCTCCACGATGTGCCTGCCAGTGCAGAGCCTGGATCAGCCCATCCCACCTGCTAGTGCAAAAAGACTGCTTACAGGGGCACTGCAAATCTGCCCAAATAACTAAAGCCATGCCACATTTACACCCTGCTTGGGCTGGTCTCTCTTAAAGGGACATGTGCACAGTTTACACACAGAGAAGATAAAAAGGAAGAAACTGCTGTTAAAGGACATAGAGTGACAGGCCAGTCACATACGGAGATGACGAGGTGATGCTAACCTTTGGCTTTCTGCTGGGTACTAGGCATTCTGCGGACTCAGAGGCAGCTGCAGAGAAAGAGTGTCCTATGGTAGAGCTGGTCACACATTCAGTGAGAGAGCTGAGCCTCATGTTGCTTCGTGGCATCAAAGAGTTCTCCTTTCATTGATAACACCATCATGTTTGATAAAGTAGAGTGCAACACCTCCTTCATTCAaccaccatctctctccatctccaactTTGCCCTCATTGGTCTCTCTGGAAGACAGAAACCTAATGCTCCATGCTTTGGCCTCACCCTCTGTTTGTGGACATGATCAGTCAGTGAGGGATCTGTAATATATATGatctaattaagcaataaggcacagagggggtgtggtatatggccaatataccattgctatgggctgttcttatgcacaacgcaacacGGATTGCCTGGACACAGCTCTTAGCCGTGGTGTATTTGCCATATACcccaaacccccgaggtgccttactgctattataaactggtaaccaacataattagagcagtaaaaataaacgttttgtcatacctgatgtatacggtctgatataccacggctttcagacaATCCGCATTCAGggttcaaaccacccagtttataatctttGTTTTTGCACGTTCAAATATTTCCTTTTTTCATACGTGGTACAATGCAATGCGCAAAATGGATATGCGCAAATTCTTGAAGCAAAATGTTACTGAGGACATGCACGTTTTTGATTATACTGGATGGTGAAAGAGCGATGTTCCTCGGCTGTTCTTCATCTTTCTCTGATTGTCTTTGGCTCCATCGTTTCCTCTTCATGCTCGCGACTCTTTCTTAGAGTGGGGCTTGTTTCCCAAAAGTGAGTCAATCTCAGCCACGGTCTGAGGAGTCATCTGTGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486465 lncRNA downstream 31880 31604476 ~ 31607119 (-) True tnfsf13
TU2486442 lncRNA downstream 36610 31602171 ~ 31602389 (-) True G2175417
TU2486183 lncRNA downstream 45755 31593013 ~ 31593244 (-) True G2175221
TU2486182 lncRNA downstream 46235 31592420 ~ 31592764 (-) True G2175220
TU2486178 lncRNA downstream 49838 31586631 ~ 31589161 (-) True G2175216
TU2486485 lncRNA upstream 8298 31650435 ~ 31652199 (-) True G2175441
TU2486506 lncRNA upstream 14972 31657109 ~ 31659689 (-) True G2175459
TU2486446 lncRNA upstream 41512 31683649 ~ 31688677 (-) True G2175418
TU2486539 lncRNA upstream 64904 31707041 ~ 31707373 (-) True G2175489
TU2486541 lncRNA upstream 68672 31710809 ~ 31711045 (-) True G2175491
XM_021591302.2 mRNA downstream 25432 31610543 ~ 31613567 (-) True LOC110510028
XM_036967302.1 mRNA downstream 28589 31608260 ~ 31610410 (-) True LOC118945265
XM_021590213.2 mRNA downstream 31770 31604094 ~ 31607229 (-) False tnfsf13
NM_001124671.1 mRNA downstream 31885 31604575 ~ 31607114 (-) False tnfsf13
XR_005040343.1 mRNA downstream 78843 31558833 ~ 31560156 (-) True LOC118945266
XM_021591309.2 mRNA upstream 31210 31673347 ~ 31678965 (-) False xrra1
XM_036967835.1 mRNA upstream 31210 31673347 ~ 31688709 (-) False xrra1
XM_036967836.1 mRNA upstream 31210 31673347 ~ 31688712 (-) True xrra1
LOC110510035 mRNA upstream 41507 31683644 ~ 31687101 (-) True LOC110510035
XM_021591314.2 mRNA upstream 85666 31727803 ~ 31731451 (-) False LOC110510037
TU2486088 other downstream 117811 31520052 ~ 31521188 (-) True G2175135
TU2485795 other downstream 632564 31003755 ~ 31006435 (-) False G2174894
TU2485796 other downstream 632564 31003755 ~ 31006435 (-) False G2174894
TU2485797 other downstream 632564 31004873 ~ 31006435 (-) True G2174894
TU2485309 other downstream 965898 30672590 ~ 30673101 (-) True G2174463
TU2486453 other upstream 27197 31669334 ~ 31673189 (-) False G2175420
TU2486455 other upstream 27197 31669334 ~ 31673189 (-) False G2175420
TU2486456 other upstream 27197 31669334 ~ 31673189 (-) True G2175420
TU2486556 other upstream 79815 31721952 ~ 31726394 (-) True G2175503
TU2486552 other upstream 84400 31726537 ~ 31729294 (-) True LOC110510037

Expression Profile