RNA id: TU2486506


Basic Information

Item Value
RNA id TU2486506
length 2087
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G2175459
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31657109 ~ 31659689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGGTGTATTATACATACGGCAAATCATCTAATTGTGTCTAACTATTTGACAAGCATGTTACTGTTGTGCTCTATCCCAGTGTGTTCCAAACCTGGTCCTTGGGCCCCCCCTGGGTGTACGtttagttttttgccctagcactacacagctgattcaaatcatcaaagcttgatgatgagtttgttatttgaatcaactgtgtagCGCTaaggcaaaaaacaaaatgtgtacCTGAGGGGCAacactgagtttgggaaaccatgCTCTATACCTTTTTTTAAAGACTGGGTCCTCCATCAACAGTATTCTTATTTTTCAATATTATTCCTCCCTGagccctctcttcttcttcagttCTCTGTATTGGAAAATGTTGGTGTCCTTCCAACTCATGACCTACATTTATATCAAATTAACAGAGCTCTATTGTTGTGCTCATCCTGTTAGGCCATTACAACCCTTGAGAAAACAAACTATAGCACTGGAGCACAAATCCAAATTACAGGCACAATTTATAAAGGAGAAATTCCCCTGGTCCGACTGGGTTCACTGGAGGGTAGTCCAAGGAATAACAACAGCCTGATTTGTGCAGGAATTCTTGCCTCAGGTAGAGCTCAACTATATCATATTTTTGGTTGGCTCCAACTTTTAGCCTTGTCAATCACGTGCAAGAATGCCTTGCCACTGTGCAAAGGGAAAAAAGATGCATCAAGTACTGAAATCACACATAATCCTATGGAAACTTAGTCTGTAGAAAACTGTCCAAACATAATGATAAACACCTCAGAGAACATAATAGAAAGAAGTTCCAGCAAACCAATGTAGCCACTCTTATGAAAGAACAGATACAACTGCTGTTGCAGGGCAATACCGATGCCCAGATATCAAACCCACGTTTTCTGAGGAAAGCCCTATATGTATACTGCCCTAccagcaaaaaggcagtaactgctcacagcgtggaactgagaaaaatggtttttatttaccttggtttcacagtaactttatgcagtaactgctaacatgacccccattttctccaaaacacaatacaatagaggcaggatacaAGTCCACATGTTTaggcatgtatttaatgtagaaAAATGACATTAACTAATTTTCaaccaaatgagcagttactgcctttttgcttgctAGGGCAGTATAGCCCAATGAACTGAAGCCATGGCGTCTCAGGCAAGGACCTTCCAGTACACACTCAAATGTCTACAGAATGTACAAACAAACATGTTAAACAAACCAAAGTTGTACGCTCTGCCTCAAAATGACATCTGTTAGCATATTTGTATTTACAATAAATATGTTAATGAATATTTCTCGGTACATTCTGAAAAGGcatacaatttcaaacagcagtATTTAGCAGAACAGTAAAGTGATTGTAAATATGGTCTACTCTATAAAGGTGTTATTGCCAGATGGCTGTCTAATTTGCCCAGTGTATTTTTCTATTATATACATGTACACCTGTATTTTTTAGATAATACTGTTTTTACTGTATTCCAGTATGCCAGAAAACAAAAATGAGATACAACTGTAATTCATTTAAAGTattttttccattttggtttcttCTACTACCAAATGCTACCAACAATGTTGACAATTCTGCTGACTAATTGTTACTGAGAATATGGAACATCACATTGTAATGAGTTATGATGacatttaaaaataaacaaaagctTGTTATTCTATAACCAATAAGCAGTGCTAtgtttcatgtttaatgaaatgCATATGAATGCTGTGCATTTTCCATTGATGTCAAAGTCAGGGGATGAGAGTTAAGAAGAGCACAGGCTTTCTAGCTGGTCTGGATACAAGAACTTCACTACCTCCCTGATACCATCCTCACAGGTCCTGGTCTTGGGAAATTCCTTCTGGTTGTCTTCTTCCTCCTTGAATCTTTTCCAAGTCTCTTCATCCAATGTCGCCAGTAAAGTGTAGTTATCTGGATTATCTAGAAGATCTTTCTTCAGAACTTCCCCAGTTTCCATTAATTGTAAAACTTCTCCTACTGTCTTCCATACTTGCACTTCAACTTCAGCAGTCCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486486 lncRNA downstream 4910 31630753 ~ 31652199 (-) False G2175441
TU2486485 lncRNA downstream 4910 31650435 ~ 31652199 (-) True G2175441
TU2486498 lncRNA downstream 14972 31638999 ~ 31642137 (-) True G2175451
TU2486465 lncRNA downstream 49990 31604476 ~ 31607119 (-) True tnfsf13
TU2486442 lncRNA downstream 54720 31602171 ~ 31602389 (-) True G2175417
TU2486446 lncRNA upstream 23960 31683649 ~ 31688677 (-) True G2175418
TU2486539 lncRNA upstream 47352 31707041 ~ 31707373 (-) True G2175489
TU2486541 lncRNA upstream 51120 31710809 ~ 31711045 (-) True G2175491
TU2486530 lncRNA upstream 60809 31720498 ~ 31797706 (-) True G2175480
TU2486526 lncRNA upstream 88084 31747773 ~ 31750415 (-) True G2175476
XM_021591302.2 mRNA downstream 43542 31610543 ~ 31613567 (-) True LOC110510028
XM_036967302.1 mRNA downstream 46699 31608260 ~ 31610410 (-) True LOC118945265
XM_021590213.2 mRNA downstream 49880 31604094 ~ 31607229 (-) False tnfsf13
NM_001124671.1 mRNA downstream 49995 31604575 ~ 31607114 (-) False tnfsf13
XR_005040343.1 mRNA downstream 96953 31558833 ~ 31560156 (-) True LOC118945266
XM_021591309.2 mRNA upstream 13658 31673347 ~ 31678965 (-) False xrra1
XM_036967835.1 mRNA upstream 13658 31673347 ~ 31688709 (-) False xrra1
XM_036967836.1 mRNA upstream 13658 31673347 ~ 31688712 (-) True xrra1
LOC110510035 mRNA upstream 23955 31683644 ~ 31687101 (-) True LOC110510035
XM_021591314.2 mRNA upstream 68114 31727803 ~ 31731451 (-) False LOC110510037
TU2486088 other downstream 135921 31520052 ~ 31521188 (-) True G2175135
TU2485795 other downstream 650674 31003755 ~ 31006435 (-) False G2174894
TU2485796 other downstream 650674 31003755 ~ 31006435 (-) False G2174894
TU2485797 other downstream 650674 31004873 ~ 31006435 (-) True G2174894
TU2485309 other downstream 984008 30672590 ~ 30673101 (-) True G2174463
TU2486453 other upstream 9645 31669334 ~ 31673189 (-) False G2175420
TU2486455 other upstream 9645 31669334 ~ 31673189 (-) False G2175420
TU2486456 other upstream 9645 31669334 ~ 31673189 (-) True G2175420
TU2486556 other upstream 62263 31721952 ~ 31726394 (-) True G2175503
TU2486552 other upstream 66848 31726537 ~ 31729294 (-) True LOC110510037

Expression Profile