RNA id: TU2486453


Basic Information

Item Value
RNA id TU2486453
length 1820
RNA type TUCP
GC content 0.44
exon number 9
gene id G2175420
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31669334 ~ 31673189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACGTCGGTGTGTTCCCGCCTGAAACGGAGGCAAAAGAGCTATCGAATAGATAGCAACATACATTGGACAATAGATGACCTTTCTTTGGATAATATTGATGAATTTGTCAACGACCAGTATATTATCAATGCTATATCATTACCTGGACCGCAAGAGGAACGAAAGCTCAGCTCTGCTCCATGCTACCTACCTTGTGTCTGGCAAGTTTGTCAATAATGATACCACGATGTGAAGTCGAAGCAGAGCCTGACCGTCAGTGTACAGTGTTCAGAAGGCAGTGCTGGAAGACAGTGGTCCCCTGTACAGTGCGGATTATGATGCTGTGAAAGAGAACCTAAGGAACTGCAGCAGGTGCAGCAGGCTCATGAGATGACACAGGCCCCACCGCTAGAGACGTTGCACACCAAATCTGGCATCAATGGTCATTCTAGTCTGGCCTCTAAACCCACCTCCAAGCAGTCCAAAGGCATTATGGGAATGTTTGCAAACAAGAATGTCTCCAAGAATCAAGAGTCAAGCAAAGAGTGAACattggagcagagagagaatgcACCTGTGGTGCGTGTTTCTGTGCTCTGCAAAAGCCATGTGATGTTCATTTCATCCAGTACAACCCATAATGCTATACCTTGTGATGtcacatttatttgatattgtaGGTTGAGCCCTCCAAAATTAAACCAGCTCCAAAGACACATCCTATGAGTAACTTCTTTGGGAATCAAGCAACCAATAAATCCTGTATGTCCGCCACATCTGGCTTACATCTGACAAATCCATCAAGGAAGAGGTAGAAGCAGCCCATATGTCCTCTTCAGTGGATGAGAAGCCCTCAAGCCCAGTCTGTAAAGCAGAGACTCCTGTCAAGGAGGAACTACCAAAAGGTGCTGCGGTTGAGAAAGATATTAGTAGTAAGAGCAAGCGTCTTGACCATTCCGATAGTGAAGAGAAGGAGAACAAGCGTTGGAGGATAAAGAAGCCCCAGTCAGACAGTACTGATGATAAGGTTATTCCAGATTCTCCTCCGAGGTTGCAAGAACAGAGGGGCCCATCACCAAGCCTTCTGAATCAAAAAAAGAAAGAACCTTTTGCTATTTTTCATTCAGATTCCATGCAGGAGCTTTCGGATtgtaagaggaggaagaggagacctGTCTTGAAACCGCGCACCTTTTTGGATGACTAGGGGTGCATTGTGACTGAGAAAGGCTATGAGAGTGAATCCTACTCTGAGACGGAGGATGACTTTAAGACAAGTAAACCATCCCAGCTGAATCCAGACCCACCAAAACCATCAACTGGCAAGAAAGGGGAGGACAAGAGAAGGAAGAATGTTGCAGCCTCTAATAAATCAACTAAGCAGGCTTCTATTATGGGATTCTTTCAAAATAAATGATCGACCTACTCTCAATGTACTGAACACTGAGAAGATTAACATCCGTTTTGAGGGACTTGAGGCCCAGGTGGAGAGAATCTAGACTGACGCACATTATCAAATGTCCCGGCAACATTTGGAAGAATGCTGTAATTTTTTGAATATATTTCCACATTAACAGAATATGATATGATAAAGTGGCATATAATAAAGTGGCATAAATATATCCACAACACATTGTAAAGTACTGTCAGAGATAGTTGACCATTGCCATGTTATTGTAGCATTTATTTTGTGGGTTTGAAATTGGTTACAATTCTGCAAGTATTGAAGGGGGGGGGACCAGAACAGATTCTGAACAGCCGCAGTACGGCACGCTCTTACCTGCCTCCTCAACTGGTGCCTTTCCTTGGGTcttgtgggaaaaaaatgtctgtcggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486506 lncRNA downstream 9645 31657109 ~ 31659689 (-) True G2175459
TU2486486 lncRNA downstream 17135 31630753 ~ 31652199 (-) False G2175441
TU2486485 lncRNA downstream 17135 31650435 ~ 31652199 (-) True G2175441
TU2486498 lncRNA downstream 27197 31638999 ~ 31642137 (-) True G2175451
TU2486465 lncRNA downstream 62215 31604476 ~ 31607119 (-) True tnfsf13
TU2486446 lncRNA upstream 10460 31683649 ~ 31688677 (-) True G2175418
TU2486539 lncRNA upstream 33852 31707041 ~ 31707373 (-) True G2175489
TU2486541 lncRNA upstream 37620 31710809 ~ 31711045 (-) True G2175491
TU2486530 lncRNA upstream 47309 31720498 ~ 31797706 (-) True G2175480
TU2486526 lncRNA upstream 74584 31747773 ~ 31750415 (-) True G2175476
XM_021591302.2 mRNA downstream 55767 31610543 ~ 31613567 (-) True LOC110510028
XM_036967302.1 mRNA downstream 58924 31608260 ~ 31610410 (-) True LOC118945265
XM_021590213.2 mRNA downstream 62105 31604094 ~ 31607229 (-) False tnfsf13
NM_001124671.1 mRNA downstream 62220 31604575 ~ 31607114 (-) False tnfsf13
XR_005040343.1 mRNA downstream 109178 31558833 ~ 31560156 (-) True LOC118945266
XM_021591309.2 mRNA upstream 158 31673347 ~ 31678965 (-) False xrra1
XM_036967835.1 mRNA upstream 158 31673347 ~ 31688709 (-) False xrra1
XM_036967836.1 mRNA upstream 158 31673347 ~ 31688712 (-) True xrra1
LOC110510035 mRNA upstream 10455 31683644 ~ 31687101 (-) True LOC110510035
XM_021591314.2 mRNA upstream 54614 31727803 ~ 31731451 (-) False LOC110510037
TU2486088 other downstream 148146 31520052 ~ 31521188 (-) True G2175135
TU2485795 other downstream 662899 31003755 ~ 31006435 (-) False G2174894
TU2485796 other downstream 662899 31003755 ~ 31006435 (-) False G2174894
TU2485797 other downstream 662899 31004873 ~ 31006435 (-) True G2174894
TU2485309 other downstream 996233 30672590 ~ 30673101 (-) True G2174463
TU2486556 other upstream 48763 31721952 ~ 31726394 (-) True G2175503
TU2486552 other upstream 53348 31726537 ~ 31729294 (-) True LOC110510037
TU2486563 other upstream 63724 31736913 ~ 31738235 (-) True LOC110509376
TU2487131 other upstream 590094 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 611561 32284750 ~ 32285483 (-) True LOC110510065

Expression Profile