RNA id: TCONS_00005320


Basic Information

Item Value
RNA id TCONS_00005320
length 5997
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_002876
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32898533 ~ 33156789 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCCACAGAAATCACCCCCAAAACCTCGGCCAGCTGCAGTCCTGCCCCAGAATCCCCCCTGAGCTCGGCTGAGGAGTCTGTGAAGAGCCAGCAGGAGGAGCAGATGTGCCGATCCTCCGTCCAGGAGCCCAGCGAAGCCTCCGAGTCTCAGCCCGGGACGCCGCTGCCGCTGCCTCTGCCGGGACAGGCCGGTCTCAGCATTCAGGAGATGGTGGCCATGTCAGCCGAGCTGGACACGTACGTCATCACGAAAAAAGTCAAAGAAGTCCTCACTGATAACAACCTGGGCCAGCGTCTGTTCGGGGAGAGCATTCTGGGTTTGACGCAGGGCTCAGTGTCTGATCTGCTGGCTCGACCCAAACCCTGGCACAAGCTCAGCCTGAAGGGTCGCGAGCCGTTCGTGCGCATGCAGCTGTGGTTGAGCGACCCGCGCAACGTGGAGAAGCTGATGGACATGAAGCGCATGGAGAAGAAAGCCTACATGAAAAGGCGCCACAGCTCCATCGGTGAGAGTCATTCGCTGGAGAGCGGCTTGTCTGCAGCAGACCTGACACAGGGTGCCACCTCAACAGCAGCAGCCCCAGCTGAAGAAACCCCGGGTGGTTCTGGCTCCGGAAGAGAAGGAAGCTCTGAAGCGGGCCTACCAGCAGAAGCCTTACCCCTCCCCTAAAACCATTGAGGAGTTAGCGAGTCAGCTCAACCTCAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGTATCCGGCGAGAGCTTTTTATCGAAGAGATCCAGGCAGCAGCAGGTGAAGGTGGATCTCCATCTGCACGGCCTGGAAAATCTGGAGGCGAGGGAGAAAACAGCTGCGACGGCACTGAGTCCGACAGCACGGCAGAAGGCCGACCGAGTGGCTCAGAGGAGCGCAAGGGCTTCCTGGAGAGCCCGGGCCTCGGCCACAGAGAAGAAGATGGCGAGGGCGAGTTTCCTAGTGCCTCGGGCACCAGCCGGCCACGAGGAGGCATCATAGACAGCCTGTTCGGCATCCCCGAGTCCATATCCGTCACCAATGCTGCCACGACCCCCTGCCGAAATCCAAAGGATAGCAGTCTACGCAAGAAGAAAGCAGCCAACCTCAACAACATCATCCACCGGCTGGAGAAAGCGGCGAACCGAGACGAGCCTCACGAATGGGAGTTCTGAGACTCCGCCGCCATCTTGACGTTTTATTCTCACTTTGTCCCTCACTGAGCTAACCCGGCCAAGCCTGGTGCACACACACCACCGGTCAACCCAAGGGTTTTCCATTTGCTGTTTCGAAGTGGGCTTTCAGAGACAAGAACAAGAAAAGGAAACGAGTTTTTAGTCTGTTTATTTTGTGAAGCACTTAACAGCCCTGCTGGCCACAGGACTGTGACACACCATTGGCTAATGGTGACGACACAAAACTGAAAAGCACAGGAGAGGGAGCGTTCCCACGAAATCTTCTCAAGACTGGCGACAGTCAcaaaaaacacactcacacactatgatCTCACAGTGTCTCTATTTCTAGTAGAGACGTTCTCACCAACTAGCTGAATAACTGTTACAATAATTTATCAGTTCTCAAGACTCTTGGGAGTTTCCTCTTTTGTATACCGTACGCTTCGGCCGTGAGCAGAGACTAGGTTTCTaaccaaaacatttaaaagtaaGTGTTGGCTGAAGGAACACGGGTGCACCGTCCCCCACCTGCCTCTCCCTCCCTTCCCCAGAGGAGGCCATCCAATGGCTATGCAACTCTAGTACGCAATGGATTCCAGAGTAATGGAAGCCGCATTATTTTCACAGTACGGAAACTTCTCCGATGCGAGAAGAAAATCCTTTTTATAGCAATTAAGTTGCCACCGAGAGATTGCACAGTCAGTTGACTCTAAACAGCACTCCTTTCGATTTTACACGCCAACGGcctaaaagagagaaaaaaaatcgaaaatcACGCAAACGAAAACAATTGTCATAAGAATCCACGTATCACGCAAAAATTCATTTCGTTCTTGTAAGGTCGATGCAAATGGGACACGGGAGATATTTCGTAACTCGATAGCTAAGTGtcaatttttcttcttttatttaggTCTCTTGtaagggtagcgctcctttattTCTTTTCCATAGCTTTAATCACCCCCGCGACTTGCGTTTTAAAGCTCGCGGAGGTCTTGTTTAATAACAAACGTCATTTTaggccaaaacaaagacagatagTGAAGAAAAAAAGGATTTGTACAGTACTTTGAGTAAATATTCCTGACGAGATATTTTTTAAAGAGAATGAACAAGCCTGATTTTTATCCTCTTATAATAGAACCATACATCAGAGACCTCTAACCAAGTTGGGCAGTTTGGAATTACCATTCTAATCCAATATCCATGGTGTTATAAATTCTAATTCTATGGTGTGCACTGTATGGGCTGGTCCTCAGCACCAGGGTACCGGACGCTCTCGTGCAAACTCGAAACTTCAGGTTTTTCACCAGCTTCTCCACTCATTGTTCACCCAAGCTTTTCACGGCGTCCACGAGTATGTTCACCTGTCCTCCGAGAcgactggaaaaaaaacaaaaaacttacgAAATGGACTTTTGTTTTCTTCATACTGTAAATGACGGAGGACTTTTCATCCACAGTTCTTGtttaacacacattttaaaaaagaggaaaatatgTCGATTGTGAATGAAAAGCTCTTTTAACGTTGGCAACCTGAGGTGAATCGCATGCGTCAGACGACGCTGCAAGGACTTGGCACCTCTGTAGAAATGTTCTTTCTCTCCTGAATCACCTTTTCGAAACCTGCTCACTTTTCACCTCCGGCCCTTGTGTCATTGTATGCAGTTGATTTAGTGAACGAAAGCGCAGATCGCCGGTGCCACGCGCTCGTCTGCGTGCGAAACCTTTGAGTGTGCgggtgtttgtgtgcgtgtgattGTTGACAAGAGTGATCTATATTtgtatattactactactactcgCCACAGGCAGTGGAAGCAAACACCTCCTCACGTCCCTAAGCTATTTAGCAGTCCTGCAGCATATCACATAGTACGTTTAAGTTCTTTTTATTTACGCGCATAAACTAAtggtagatattttttttttccgtttgttTGTTGGTGTGGTTTGCTTATTTATAGATGCTGTCTTTTACATATTGATGTCTTATATTGTTATACGTGTTCTTTTTTTGTAATGGAAGGGACTATAAAAGGTCAGGTTACATATTTTTAGACTAATAGACTGCCGGCAGTATtggattacatttaaatgatGTACTTTTGATACATGTCTATTGATTAATTCTGAAgattatctctttttttttccatatattttaCTCGGTTAGTGAGCTGGATGAACAGTTTCTACGTTGACAAAGGAAGCAGAATTCTATGTATTGCATTAATGATTTTAATTAGTAcgcattttagatgttttaacgAGATGACAATTCAAGGCGAATTGCGTTTGGCTGTATTCACTCTACAAATGACGCTCTTGAATTAGGTTTTCAGGTGATTAACCTGCGAACTTCCTGAGATTACGTTTATTATTATCGCAATCAAGCTTAGTTGCTACAATGAGCCAGTGAACAACTGGTAGTTAACGTCACTGAAAATTTTAGCTGTCGCTTTGAGCTGCACCTTGAGgaattggactttttttttttgttctttttaagtAGGAATGAAATTCACTTGATGTCGTTTGGttgcgttaaaaaaaattacgcCGACGAATCTCGAAGAACGCCGTCGGCTTAAAACTACCTTTTGGCCTTTTTTACGCGTGCCAATGAATGATTCAAATCAAATTTGTCTCTTTAAGACCTAACGAAAGCACAGAGAGATACTACGTGTACCAATCGAAAAATATGAACACGTCAGAAGCCCGCGACTGTTTCTCGAACTTTCTCTCCACGTCTAACATTGGAGTGCCTTCACTGAAAAAAACTGTTCGCTACTATAATTGCGTCGTCTTCATTCCACGTTACTTAATCGGAAAAATACCGTGTGTCAGATCATAAAACTAAGTTTTTAGCAATCTCCGCCAGCAAGTTTATATTAATAAGGTCTCATATAGTCTCAGGTCATAACATTCAGTACTTTTAGGGTGTCTCTATCGTTTTATCTGAGAGAAAACAGCTGTCCCAGGATTCAAGCttgtaaaacatacaaaaactaaaaaaaccaAAGGCAATTTTCGATCGGTTAACGCCACATTTACTCATCCCAAATGTGTTTTAATCATGTCTAGGCATTCATCATATGTTTATAACCATGTTATTGTATTTTAACGGCAAGTTTCCCCTACGCTGGAGGAAGTTCACAGATGGGATTCGGCTTGTGGAAACTCTACTATAGTGTGGACCAAATTGTCAAAGCAGACAAATCAGCTTGtaaagactctttttttttttttctgatcataAACATGTGATCTCAATTGAACAcagaagaaacacacacacacacttttaagaGCACATTCAGATCTGGTCTATATTAAGGACACATTTTTATGTCCGTCACGTTCTTCTCACTGACTGAAACGTAACTGTACTGTCGATTTCAtggcatgaaagaaaaaaaaaaacagacagatgtcCAGCACTTTTTTCTCTgctttttgcaaatatttttctATGGAAAGTATTGCAGATGACTAAACACATCAACAATAACGACTGCACAAAGACAGCACGTTTatatgatttcttaaaaaaaaggacaaaaaaatcaacaaaaaaaaatagaaaaactaagcaacaaaaaaaatagataaataaataacgaTCATCATTATTGATATTACATTGGTAGTCACGAGTAGCATTAATGTAGATATTCGTCCGTAGCTTAGTTGGCTAGTGATGTCATAATTGTTACCTCGTTTATTCCCTCACACTTACATCACTTCCTGAGACAGTATGTTCTTTCTTCACCTGAGACAGTATGTTCTGAACAGCCACAATTTGTTTCATCGTATCCCAGATGGAGATCCATTTacattcatttctgtttgtttgttttgaaagttGTGTAGTTGTGTTACATGTGAGGCGAGCACGACGATTATACATCTGTCTCAGCGAGAGCAACACTTTAGTATCACCATTCATTTCGACCAACAATCTATGGAAATGGGATGTCTTGATCATGACAtgcagatctctctctctctctctctttctgttgttGCTCTGTATGCTGTATTATGGGTAAAATGAAGCCTTGTAATGAAAAATGACAGGCAGCTCCCGACACAAGCTGGTATCCTATAGATTCTCCTTAGGTCTCTCAAAGCTCAGGTAGAACCTCGGTTTAGCACAGTCCTTTTGTCCATTAGTTTGTTGGTGACACTTTCCCTCTTAACACCTGCTAACGACAGTTGTATGGTTTATTTTTCTATGTGTCATGGTTTTGAACCACAAGATGGAGCTGAATCCTCCATTTTACCTGAATAAAGACTCTTCCACTTTGTTCTCTTGATATGTATTCAGTTCGGTTGGTTTTTCCTTTGTGTATCATCATGTAGTCTTGTATTCTGTTCCCAGCGCTGTTACAGTTCTAATCCAAATTGAAAAAAGAAGCAATATCACTGTTtgaaattcattattattattataattattattattattcctcaTTACCACCATAGGTGTATTAACTGAAGTAAATATCTTTTGTACAAACACATCACCACTGTACTCTGCATTTATTTGAGCGTTTCTTATGTCGGAAACTTGAAACTAATGTTCGAAATCTATTATTTATATCATCATGTGTAAATGCTTTTATGAGtatgtacactcactggtcacttagGTGCATAAGGTTGAGCTCCATTTTGTTTTCAGAACGTAATCCTACAAAAACATTACTCAAAGATTTTGGTCTACATTTGCAAGATTTATCAgcaaatccatatttatttattttttagaaattgcATTGAGTGATATTTCA

Function

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5868 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human CUX1 (cut like homeobox 1).

Ensembl:

ensembl_id ENSDART00000136245

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006083 lncRNA downstream 1589 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006082 lncRNA downstream 118243 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00005772 lncRNA downstream 220288 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006081 lncRNA downstream 307071 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005771 lncRNA downstream 647687 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006084 lncRNA upstream 237899 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005338 lncRNA upstream 696934 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006085 lncRNA upstream 742475 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005339 lncRNA upstream 955441 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006086 lncRNA upstream 1276092 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00005319 mRNA downstream 7916 32881586 ~ 32890617 (-) True XLOC_002874
TCONS_00005317 mRNA downstream 18235 32856929 ~ 32880298 (-) False XLOC_002873
TCONS_00005318 mRNA downstream 21183 32866450 ~ 32877350 (-) True XLOC_002873
TCONS_00005316 mRNA downstream 21185 32854901 ~ 32877348 (-) False XLOC_002873
TCONS_00005315 mRNA downstream 46686 32809620 ~ 32851847 (-) True XLOC_002872
TCONS_00005324 mRNA upstream 319720 33240410 ~ 33251876 (-) True XLOC_002878
TCONS_00005325 mRNA upstream 333262 33253952 ~ 33265566 (-) True XLOC_002879
TCONS_00005326 mRNA upstream 348681 33269371 ~ 33297864 (-) True XLOC_002880
TCONS_00005327 mRNA upstream 385288 33305978 ~ 33343244 (-) True XLOC_002881
TCONS_00005328 mRNA upstream 446665 33367355 ~ 33379850 (-) True XLOC_002882
TCONS_00005308 other downstream 287764 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 287839 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 1793779 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2367276 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 3159425 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 456128 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 456311 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 456440 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 1111593 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1406572 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

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