RNA id: TU2486708


Basic Information

Item Value
RNA id TU2486708
length 1455
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G2175644
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31991010 ~ 31992579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACTGCTGAACAAAAAGGTATTTTGGATAAAACAGCATTTGGTGAAATAAtatcaaataaatacatttaacaaAGCACCACAATATTGATCAAAGGCATGAAGTTGCACTGTGTATATGGGAAGCTACATTCAATAAAAATAGTTTAAATTTCCAGCACATGCACCAGACAAAGTTAGAGAAAAATTCTAAACTGAATATGTAAAATAAAATCCATCAGGAGAAACTAAAAAAGGTGCTAAATAATAAAAACACAATTCACATTAAAGCAGTACAAGCAAGAAACCTTTTTCCCTTTTAAAAACACATTTGGACACTTGGAAAGGACTGGGAATGAAATCACACTCAAGCCAGTTAGCTACAACAAAAGAAGAAAAACaatcaaacacacaaacagacattcATTTGAGACTACGACGAGCACATATCCTATCACACAATCAGAACCCAACAGCCTATTGTATGTTGATGCTGTTTTAAGTCAAATTTGAAAAGTAACAACACCCTGAAGGGGTGGGTGTACCGAGAGTGTTTAAatactggtcccagatctgtctcgGCTTTAGACCTCtgactatagcctggtcccagacctatatGATATTTTGCCAACTCCTCTGAGAATTGTTGCCCTGCCATGTATAAAACATGTAACCTGTATGGCATGACAACTACACAACAGTCAGAGACGTCTAAACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAAGTCTATACCCTTGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTTGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACaggtctggaaccaggctagtCAGAGAAGTCTATACCCTAGACAGGTCTGGAACCAGGCTATAGTCAGAGAAGTCTATACCCTAGACCAGTGGCAGCAGCCCTACACGGTCAGCCCCACAGCTCTCCCTGGAGGGCACACGCAAAAACAACAGCCCAATTCAAAATATCCAACTAACAGAAATACAATCTCTTGTAAGTTTGGACATAAAATGATGTAACTAAGATGTAAAAAGGGTTTAAGAGCGAGTTGGACATGGAAGGATAATAAAACAGTGTGAgtagaaatggggggggggggtcatctcTCCCCTCAGTGCGACGGCGGACAATGGGGGGGTGGACAgttttcacattcctgcaggcagCGTACGGAGGAGACCGGGGGGGCTCTTTACTTCTTCCAAACGGTGTAGAAAACCCACCTGAGTCAGCTCATTAAGGAAAATGCTATGTAAACAACAAGTAACCAAGACTCTTAAGTGCAATACTCTTTTCTTGAAGGATACAGTTCCATATAAGAGggcacacacaccacctccttgGAGAAGTCTACAGGACATGAGAGCCTTCCCAGCTGCTCCTCATAAAGAGCCAGTGTCTCAGTCAGATTGGCACTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486714 lncRNA downstream 365 31989016 ~ 31990645 (-) True G2175645
TU2486686 lncRNA downstream 19828 31970896 ~ 31971182 (-) True G2175630
TU2486685 lncRNA downstream 20350 31970458 ~ 31970660 (-) True G2175629
TU2486671 lncRNA downstream 82630 31908096 ~ 31908380 (-) True G2175615
TU2486663 lncRNA downstream 88270 31902464 ~ 31902740 (-) True G2175607
TU2486755 lncRNA upstream 41430 32034009 ~ 32034314 (-) True G2175663
TU2486756 lncRNA upstream 41803 32034382 ~ 32034713 (-) True G2175664
TU2487024 lncRNA upstream 117062 32109641 ~ 32109877 (-) True G2175890
TU2487027 lncRNA upstream 119107 32111686 ~ 32111908 (-) True G2175893
TU2487036 lncRNA upstream 127927 32120506 ~ 32120943 (-) True G2175902
NM_001124596.1 mRNA downstream 32446 31956161 ~ 31958564 (-) True LOC100136606
NM_001124255.1 mRNA downstream 43316 31942742 ~ 31947694 (-) True LOC100135879
XR_005040518.1 mRNA downstream 61943 31920420 ~ 31929067 (-) True LOC118945355
XR_005040517.1 mRNA downstream 70702 31914625 ~ 31920308 (-) True LOC118945354
LOC110509423 mRNA downstream 76675 31910070 ~ 31914335 (-) True LOC110509423
XM_036967893.1 mRNA upstream 28871 32021450 ~ 32037827 (-) True LOC110510054
XM_036967711.1 mRNA upstream 110629 32103208 ~ 32106558 (-) True LOC110509424
XM_036968075.1 mRNA upstream 210412 32202991 ~ 32212026 (-) False LOC110510059
XM_036968070.1 mRNA upstream 210412 32202991 ~ 32219464 (-) False LOC110510059
XM_036968072.1 mRNA upstream 210412 32202991 ~ 32219464 (-) False LOC110510059
TU2486563 other downstream 252775 31736913 ~ 31738235 (-) True LOC110509376
TU2486552 other downstream 261716 31726537 ~ 31729294 (-) True LOC110510037
TU2486556 other downstream 264616 31721952 ~ 31726394 (-) True G2175503
TU2486455 other downstream 317821 31669334 ~ 31673189 (-) False G2175420
TU2487131 other upstream 270704 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 292171 32284750 ~ 32285483 (-) True LOC110510065
TU2487112 other upstream 438931 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 439074 32431653 ~ 32433641 (-) False cpi1
TU2487113 other upstream 439245 32431824 ~ 32433641 (-) False cpi1

Expression Profile