RNA id: TU2487606


Basic Information

Item Value
RNA id TU2487606
length 1761
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G2176362
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32767583 ~ 32769398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAAAACAATAAAATATTAAGCACAGGCATTTGAAGAAAATGTGCAAAGCAGCACTTTGTTtttatctacaacatattgtttTCAGACTGTACTGTAATTCTGGTAAGTTACTATCTCGTCATGGTAACTAAAAAGGTGTCTACTCAAAGAAATGAGCAAAATCTTCAGATTGCAGTTGCAGGCAGACGTGTGTGTCTTATTTTGGATAAAATGCATGAACAGTAAGCCAAATATCAGAGCAGAGCCTTTGAGTGACGTGACACTTGCTTTACTCCCAAATCTATTCTGTACACACTGTGTCTAGGTATCTGTGAAATCAGGAATGTATCTTATTGTCTTGGAAGTTGTGTTATATTATGAAGTAATTATTGATCCGGGATTATATGTTATTGTGGTTTCTTTTGCCtcgtctgtctcggtgtctgtatTAAATGTCCGAACGTGACATGCCATTTGGGCCACCAGCTGTGTCATGTCCATAGGAACAGGATATACAGAGATTTAGGtcatacaattatatttttgtccaATGCAAGTTCACAGAATCACTCAATTTACCGGTAATCTATCTGACAGCTGTCTTAAACTATCCTGGTAAACCATTCCATTATCAAATAATATATTTTAGTTTCTTACTTTAAACGTTAATAGTAATATTGACCAATCATGTTGTAATCTACAGCTGATAACAGTCTGGTGCAGATTGCGAAGCAGCAGTCACGATGAGTCTGGTAGCATACTCAATCAAGCCTGCTACAACTGCACATGTCAAATCCTCTTCATAGAACTAAACAATCATTTATAACCTCATTATGTCAAGAAGAACCTTTAGTCTTTTGTTATGTCACATGTTGTAAATGGAAGAGGTCTAATAGCCTTAACAGTCTTCTAAGATATTAGTGGCAGTGTATGCAAATGAAATAAACTCCTAATAATATTACATTTTTGCTCAAATACTGTCTTATCAACAACCCTAATTTTGTAAACTTAACCTGAACCATCAAAATGCATGGACAATAACACATATACTAAATACCCATTTCTATACCCACTCACAGGAAGTTACATTTCAGTACAATTATTAATATCAATTTGTACCTTCACAACAGCTGTATTGTAATCCCTCAATAccttaataataataaataaaaacccaGTGTCAAATTAATTACTCTCCTTTTCTTACCCTACATAAGAAGGCAAACTTGTGACCAACAATATTTTTCAGAGGGAATCTTTAGCCCAAGCcagattttttatatttttttgtgaaaattaTACCACAGTAAGCTTGGACTCCTAATAGTGTCCAAAACGGTCAATATGGGATTACATTTACCATGTTCCAAATTCCATGGCAATgtttgcacacgcacacacacgcacacatacaaatacacacgcacgagtacacacatacacagattaACACATACACTCATACAAAGAtatatttatactgtatataggtgTGTGTTTgaatttgtgtatgtgtgtgtgtttctttcatAGGCCTTTCGGTAGTGTTCAACACATAAATCAGTATTTTAGGAAAGCATACATTTAGAGGCCTGTAGTAAGGATCCATCCAGTGGATCAATATCAAACTACAAAGCCTTAAGGCCACCATCTTGTTTTTCTtttagaataacaaaaaaaactcATTTCTGGGAAACTTAATGTGCCAGTGTCTATACTGATTATTCTTCATgcctcaaaataaaaaaaaatctagtgCCATTTTTCTTTTCATTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487605 lncRNA downstream 40636 32723204 ~ 32726947 (-) True LOC110510092
TU2487621 lncRNA downstream 119649 32646687 ~ 32647934 (-) True G2176377
TU2487612 lncRNA downstream 137370 32629948 ~ 32630213 (-) True G2176368
TU2487399 lncRNA downstream 196205 32570852 ~ 32571378 (-) True G2176190
TU2487393 lncRNA downstream 204526 32562490 ~ 32563057 (-) True G2176184
TU2487603 lncRNA upstream 5421 32774819 ~ 32775108 (-) True G2176359
TU2487604 lncRNA upstream 9896 32779294 ~ 32779568 (-) True G2176360
TU2487680 lncRNA upstream 22480 32791878 ~ 32792317 (-) True G2176433
TU2487696 lncRNA upstream 45073 32814471 ~ 32814697 (-) True G2176448
TU2487689 lncRNA upstream 55834 32825232 ~ 32825994 (-) True G2176442
XM_021591418.2 mRNA downstream 40581 32718378 ~ 32727002 (-) False LOC110510092
XM_036968155.1 mRNA downstream 98213 32662292 ~ 32669370 (-) False zgc:175280
XM_036968156.1 mRNA downstream 98213 32662292 ~ 32669370 (-) False zgc:175280
XM_036968159.1 mRNA downstream 98213 32662292 ~ 32669370 (-) True zgc:175280
XM_036968157.1 mRNA downstream 98218 32662292 ~ 32669365 (-) False zgc:175280
NM_001160491.1 mRNA upstream 28227 32797625 ~ 32799913 (-) True si:dkey-251i10.1
XM_021591423.2 mRNA upstream 31182 32800580 ~ 32813596 (-) False LOC110510097
XM_036968125.1 mRNA upstream 31182 32800580 ~ 32813596 (-) False LOC110510097
XM_021591424.2 mRNA upstream 31182 32800580 ~ 32813597 (-) False LOC110510097
XM_021591426.2 mRNA upstream 31182 32800580 ~ 32813597 (-) False LOC110510097
TU2487607 other downstream 123011 32643402 ~ 32644572 (-) True G2176363
TU2487111 other downstream 333942 32431949 ~ 32433641 (-) False cpi1
TU2489160 other upstream 741898 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 1352084 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 1569513 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 2033793 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 2033793 34803191 ~ 34809303 (-) True G2178372

Expression Profile