RNA id: TU2487897


Basic Information

Item Value
RNA id TU2487897
length 1683
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2176615
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33058769 ~ 33062428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggagcgtttgacagtgatgaggggtggtcgtttgaccgcggacccataacggatgcaggcaatgaggcagtgatcgctgagatcctggttgaaaacagcagaggtgtattggccaggatgatatctatgagggtgcccatgtttacggattgaGGGTTGTaactggtaggttccttgatcatttgtgtgagattgagggcatctagcttagattgtaggactgtcggggtgttaagcatatcccaatttaggtcacctgacgatagacagttaacccactgtgcaATCAATTCATATATGGTGTCCAggacacagctgggagctgagtggggtctataacaagcagcaacagcgagggacttatttctggagagatgtatctttaaaagtagaagctcgaactatttgggcatagacctggatagtatgacagaactctgcaggctatctctacagtagattgcaattaTGCCCCCTTTAACAATTCTGtgttgatggaaaatgttgtaattggggatggaaatttctgaatttttggtggccttcctaagcaaGGATTCAgtcacggctaggacatcagggttggagGAATGTGCTAAagtagtgaataaagcaaacttagggaggaggcttctgatgttaacatgcatgaacccaaggcatttacggttgcagaagtcaacaaatgagagcgcctctggacacacagggcctgggttaacctctacatcaccagaggaaccgAGGAGAAGTAGGacgagggtacggctaaaggctataagaactggtcgtctagtgctttgggaacagagaataaaaggagcagaatTCTGGgtgtggtaggatagattcagggcatagtgTACAGAAAAGAGTATGGTAGGGTGTGAGTAAAGTgggggtaaacctaggcattgagtgactatgagagaggttgcatctctggaggcgccagttaagctaggtgcggtctccgcatgtgtggggggtgggacaagggggctatctgaggcatgttgagcggGACTAGGAgctccgcagtaaaataaaacaatgagagctgccctaaacaacagtatacaaggcatattaaCATTAGAgaaaggcataaagcaatcagggggggcagagtagcctagtggttagagcgccgGACTAGTAACAGTAAGGtttcaagatcgaatccccgagctgagaaggtagaaatctgtcgttgTGCCCCTGagcaatgcagttaacccactgttcctaggccgtaattgaaaataagaatttgttcttaactgacttgcctagtaaaataaatatttttaaatcACAAGTGTTTattgggagagctaagacaacaatgggtaaCTGGCAAAGAGGGTCAGttagctacacacagggcctgagtttgaggctggggctgacagataaacaaaatgaagtACTGTGTTAACGAACTATCCAGCAGGCATCAACTGTGTAGCTAAGttatcatagggtccaatgagcagtaatagatgaaacagggagcAGTTCGGTAGTTGATTACTACACTAGGCAAGTGGAAGACATGGCGTTCAGGAAGCTAGCGGGCCGGCGCCTAGCAGATGGATCATCACCAACATCCACAACCCAGAGGCTGGTTGAGAGCACATTGGCTGAATTATATCAGCAGACCAGTTGTGATGGATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487890 lncRNA downstream 674 33055173 ~ 33058095 (-) True LOC110510107
TU2487872 lncRNA downstream 19619 33038944 ~ 33039150 (-) True G2176596
TU2487806 lncRNA downstream 64901 32993625 ~ 32993868 (-) True G2176552
TU2487804 lncRNA downstream 67798 32990750 ~ 32990971 (-) True G2176550
TU2487803 lncRNA downstream 68061 32990421 ~ 32990708 (-) True G2176549
TU2488049 lncRNA upstream 66096 33126547 ~ 33129922 (-) True G2176707
TU2488051 lncRNA upstream 69608 33130059 ~ 33133784 (-) True G2176709
TU2488056 lncRNA upstream 104043 33164494 ~ 33165906 (-) True G2176712
TU2488073 lncRNA upstream 131920 33192371 ~ 33192615 (-) True G2176729
TU2488074 lncRNA upstream 132327 33192778 ~ 33193110 (-) True G2176730
XM_036967591.1 mRNA downstream 612 33040945 ~ 33058157 (-) False LOC110510107
XM_036967592.1 mRNA downstream 612 33040945 ~ 33058157 (-) False LOC110510107
XM_021591443.2 mRNA downstream 617 33040945 ~ 33058152 (-) False LOC110510107
XM_021591444.2 mRNA downstream 617 33040945 ~ 33058152 (-) False LOC110510107
trnaa-agc-231 mRNA downstream 38506 33020191 ~ 33020263 (-) True trnaa-agc-231
XM_021591445.2 mRNA upstream 2000 33062451 ~ 33066498 (-) True ecscr
XM_036968361.1 mRNA upstream 6454 33066905 ~ 33191585 (-) False ppp3ca
XM_036968362.1 mRNA upstream 6454 33066905 ~ 33191586 (-) False ppp3ca
XM_036968363.1 mRNA upstream 6454 33066905 ~ 33196719 (-) False ppp3ca
XM_036968302.1 mRNA upstream 266259 33326710 ~ 33390385 (-) False zgc:100829
TU2487607 other downstream 414197 32643402 ~ 32644572 (-) True G2176363
TU2487111 other downstream 625128 32431949 ~ 32433641 (-) False cpi1
TU2489160 other upstream 450845 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 1061031 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 1278460 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1742740 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1742740 34803191 ~ 34809303 (-) True G2178372

Expression Profile