RNA id: TU2487898


Basic Information

Item Value
RNA id TU2487898
length 2330
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2176615
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33058769 ~ 33062428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctcatttacaactgcaacctggccaagataaagcaaagcagtgcgacaaaaacaacacagagttacacatgggataaacaaacgtacagtcaataacacaatagaaaaatctgtatacagtgtgtgcaaatgaagtaaggaggtaaggcaataaataggccaatagtggcgaagtaattaaaaTGTAGCAATTTATgtgtgcaaaatagcagaaaaacaaaaacaaatatggggatgaggtagatagttggttggatgggctatttacagatgggctgtgtacagctgcagcaatcagtaagctgctctgacagctgacgcttaaagttagtgagagagatataAGTCACCaactttagtgatttttgcaattcattccagtcattggcagcagagaactggaaggaaaggctgccaaacgaggtgttggctttggggatgaccagtgaaatatacctgctggagtgcgtgctatgggtgggtgttgctatggtgaccagtgagctgagataaggtggagctttacctagcaaagacttatagatgacctggagccagtgggtttggcgacgaatatgtagcgaggaccagccaacgagagcatacaggtcgcagtggtgggtagtatatagggGCTTtcatgacaaaatggatggcactgtgatagactgcatccaatttgctgagtagagtgttggaggctattttgtaaatgacatcgccgaagtcaaggatcggtaggatagtcagttttacgagggtatgtttggcagcatgagtgaaggaggctttgttgcaaaataggaagccgattctagatttaactttggattggaggtgcttaatgtgagcctggaaggagagtttacagtctaatcagacacctaggtatttatagttgtccacatattctaagtcataaccgttcagagtagtgatgctagtcaggtgggcgggtgcgggcagcgatcagttgaagagcatgcatttcgttttacttgcatttaagagcagttggaggccacagaaggagtgttgtatgtcgttgaagctcgtttggaggttgttaacacagtgtccaaaataGGGCCAGAtgtgtacagaatggtgttgtctgcgtaaaggtggatcaaagaatcacccacagcaagagcgacatcattgataaatacagagaaaagagtcggcctgagaattgaaccctgtggcactcccatagagactgccagaggtccggacaacaggccctccgattttacacaatgaactctatctgagaagtagttggtgaactaggcgaggcagtcatttgagaaaccaagactgttgAATCTGCAAATAAGAATATGGTCATTGACAAAATCGAAAGCATTGGCCAGGTCGataaagacggctgcacagtactgtattttattgatggtggttatgatatcgtttagggggtgcagagctgttggccggggttggggtagccaggtggaaagtatggccagccgtagagaaatgcttattgaaattctcgattatcgtggatttatcagtggtgacattgtttcctagtctcagtgcagtgggcagctggtagGAGCTCCtcttattttccatggactttacagtgtcccaaaactttttggaattagttctgcaggatgcaaatttctgtttgaaaaagctagcctttgctttcctgaccgTGTGCATTggctcctgacttccctgaaaatgaACATATCGCGGAAACTATTCAAAGCTAGTGCAGTAtgccacagggtgtttttgtgctggtcaaaggcagtcaagtctggagtgaaccaagggctatatctgttcttagttcaattttttttgaaaggggcatgcttatttaaaatggtgagaaaagcacttttaaagaacaagcAGGCATcttctgacgggatgaggtcaatatccttccaggataccctagccagaggcctgctcgcagaagtcttttagggagcgtttgacagtgatgaggggtggtcgtttgaccgcggacccataacggatgcaggcaatgaggcagtgatcgctgagatcctggttgaaaacagcagaggtgtattggccaggatgatatctatgagggtgcccatgtttacggattgaGGGTTGTaactggtaggttccttgatcatttgtgtgagattgagggcatctagcttagattgtaggactgtcggggtgttaagcatatcccaatttaggtcacctgacgatagacagttaacccactgtgcaATCAATTCATATATGGTGTCCAggacacagctgggagctgagtggggtctataacaagcagcaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487890 lncRNA downstream 2004 33055173 ~ 33058095 (-) True LOC110510107
TU2487872 lncRNA downstream 20949 33038944 ~ 33039150 (-) True G2176596
TU2487806 lncRNA downstream 66231 32993625 ~ 32993868 (-) True G2176552
TU2487804 lncRNA downstream 69128 32990750 ~ 32990971 (-) True G2176550
TU2487803 lncRNA downstream 69391 32990421 ~ 32990708 (-) True G2176549
TU2488049 lncRNA upstream 64119 33126547 ~ 33129922 (-) True G2176707
TU2488051 lncRNA upstream 67631 33130059 ~ 33133784 (-) True G2176709
TU2488056 lncRNA upstream 102066 33164494 ~ 33165906 (-) True G2176712
TU2488073 lncRNA upstream 129943 33192371 ~ 33192615 (-) True G2176729
TU2488074 lncRNA upstream 130350 33192778 ~ 33193110 (-) True G2176730
XM_036967591.1 mRNA downstream 1942 33040945 ~ 33058157 (-) False LOC110510107
XM_036967592.1 mRNA downstream 1942 33040945 ~ 33058157 (-) False LOC110510107
XM_021591443.2 mRNA downstream 1947 33040945 ~ 33058152 (-) False LOC110510107
XM_021591444.2 mRNA downstream 1947 33040945 ~ 33058152 (-) False LOC110510107
trnaa-agc-231 mRNA downstream 39836 33020191 ~ 33020263 (-) True trnaa-agc-231
XM_021591445.2 mRNA upstream 23 33062451 ~ 33066498 (-) True ecscr
XM_036968361.1 mRNA upstream 4477 33066905 ~ 33191585 (-) False ppp3ca
XM_036968362.1 mRNA upstream 4477 33066905 ~ 33191586 (-) False ppp3ca
XM_036968363.1 mRNA upstream 4477 33066905 ~ 33196719 (-) False ppp3ca
XM_036968302.1 mRNA upstream 264282 33326710 ~ 33390385 (-) False zgc:100829
TU2487607 other downstream 415527 32643402 ~ 32644572 (-) True G2176363
TU2487111 other downstream 626458 32431949 ~ 32433641 (-) False cpi1
TU2489160 other upstream 448868 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 1059054 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 1276483 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1740763 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1740763 34803191 ~ 34809303 (-) True G2178372

Expression Profile