RNA id: TCONS_00005322


Basic Information

Item Value
RNA id TCONS_00005322
length 4407
RNA type mRNA
GC content 0.57
exon number 25
gene id XLOC_002876
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32898533 ~ 33156789 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCCAATGCGGGATCGATGTTTCAATATTGGAAACGCTTTGATTTGCAGCAGCTCCAGAAAGAACTGGATGCCACCGCCACAGCCCTGGCCAACCGACAGGATGAGAGCGAGCAGTCCAGGAAAAAACTCATCGACCAAAGCCGCGAGTTCAAGAAGAATACTCCAGAGGATTTGCGTAAACAGATAGCTCCTTTGCTGAAGGGCTTCCAAGCAGAGATCGACGCCTTGAGTAAAAGAAGTAAAGAATCAGAGGCTGCTTTCCTCAGCGTGTACAAGAGATTAATCGATGTCCCAGatccCGTCTCGGCACTGGAAGCAGCTCAGCAACTCCAGGTGACGGTTCGGAAGATGCACGACTTGGAGACCGAAAACCAGAGGCTCAAAGATACACTACAAGAGTACGAACGTGAAATTTCAGAGGTTAAAAACCAAGAAGTCACTATTAAAGCACTTAAAGAGAAGCTGGAGCAGTATGAGCGTTCTCTGCAGGCCAAGAACACAGAGGAGGCTGTCGAGCCGAACTTGGACTCATCAGAAAGAGAAGAGAGGCAAAGCAAAGGAGAAAACCTTCCAAACAACTATGCAGACAAGGAGAGTCAGCCAGAGCAGAGCCAGGAGAGCAGGACAGAAGACTCGGATGTGAAAACACAGTCCTTACAAACAGcACTTGAAGCAACTCAGGCAGAACTCCACGAACTGAAGACGAAATATGATGAAGAATCCACAGCAAAggCCAATGAGATTGAAGCGGTGATGACAGACTTGGAAAGAGCCAATCAGAGGGCCGAGACGGCAGAGAGGGAGGCCGGGACCCTGAGGGAGCAGCTCACTTCTGCTGGAAAGACCATGCAATCATCCAATCAGATCCAGAACGCTCCGGAAAtgGACAAGTCTCTGGAGGCAGAGCTGGGTGCGAAAGAGAGGGAGGTGGAGCGTTTGGCTGAGGACGTTCAGAGACTTCAGGCCAGTCTGGCTCAGCTCAGCGAGACATCAACCAACCAGATCAGCCAGCTCGAGCAGCAGCTCAGCTCCAAAGAGGCACTACTAAAGCAACTTGAAGAAAAGCTTCAAGATCAGTCAGACTACGAGGAGATCAAACGAGAACTCTGCACCCTGAAATCAGTGGAGCACAACTCATCAGATCATCACTCTTCAGCGCAGGACTCATCCAAGCCACTGGAGATGTTGCTGACAGGGAAAGACCATAGCCAGCTGTCAGAGAGCGCTTTGAAACGACTGGCCAACAGTGACTTCACTGGAGCAGTGGGCCGTAAACTGAAAGAAACTACAGTGGAAAACCCTCAGCGTCTTCCTGCCACTCCGGTCCCGACCACCCTCCAGGGGTCTCCACCTCCACCCTCCCCTCAGCTGCTGATGAGGACGGGCACCGCTACCTCCGAATCCGCTGCCAGTGCCAACGGTACCCACCCTTTCTCCCCCACAGGCATCGGGCCGGACTTCTTCACCCCCGGCATGGCCAGCGTGGGCGCCACGTTCCCCCCGCTGGCTGGCAAAATGGCACTCAACTCTCTTCTTCAGAGGCAGCTCATGCAAACCATCTACACCAAAGCCCTCCAGGACCCCTCTCCCAGTTCGGTGCTGTTCGGGCCACCCCATTACGCTACCACCAACTCCCTCTCCAGCCCCCTGCCGCCCCAGTCGGCAGGCAGCCCGGAGGTTAACGGCATGGCGCCTTCGCCCAGCCAATCAGAGGGCGCGGGCAGCACGTCGGAAGGTGAGGAAATGGATACAGCGGAGATTGCCCGACAGGTCAAGGAGCAGCTGATCAAACACAACATCGGCCAGCGCGTGTTCGGCCATTACGTGCTGGGTCTCTCCCAAGGCTCCGTTAGCGAAATTCTGGCTCGGCCCAAACCTTGGAGCAAGCTAACCATCCGTGGCAAAGAGCCGTTTCACAAGATGAAGCACTTCCTGTCCGATGAGCAGAACATCCTGGCGCTGAGGAGCATCCAGGGCAGGCAGAGAGGTAACATCACCACACGGATCCGCACGCCTGAAACCGGCTCCGATGAAGCCATCAAGTCCATCTTAGAGCAGGCCAAGAGAGAGTTACAAGTGCAGAAAGCAGACGGCGTGGGGGAGAGGCATCGGCGATCAGGTTACCACAGAGGGTCGGGCAGCTATTTCCAAATATATGCACACAGTCTAAGACTTGAAGAATCTAACATAGATCTGAAACCCATGAGGATGACTAAGCAATTCGAGAGCTCTCAGCCTCCGTCCTCCTCCAGCAACTCGGACGAGAACATTCGCTCCATCCTCGAGCAGGCTCGCAGGGAGATGGAGGCGCAGCAGGTGGCACTGGAGCCCGTCTTGAAGGCCAGCTCCATGGGCCCGACGGACCTCTCGCTCCTGGGCTCCAAACTCCTGGGCTCCCCGCTCTCCACCCTGCCCTACACCCCCATCACCCAGTCCCTGAAGAAGCCCTCTAGTTCACCGCTGCTGGACTTCCACCATGGTGGAGTGAAGAAGGAGATGGGCGAGGTGGCCGTTTCGGATGTGGGTCTGGACGGAGTGGTGCCCAAGCTGGGCCGTTTGTCTGAGAGCGGTTTGGGTGGTGGCTCGTGGAGGGAGCACTGGTGGAGCACAGGCCTGTCAGAGCGCCGCGGGTCCAGCCAGCCCTCCGTTAGTGAAGACGCACACAGTCAAGAGGACAGCAAAGAGAAGCTCCCTCGGCTGGGCAGCACTGCGCCGGTGGCTCCTGCGTCGTCTCTGGATTACTGGAAGGACTGGCCGAGCTCAGAATCGCCGTACTCTCAGAGCTCAGAGCTCAGCCTGCAGATGCCCAGTGGCAGTGAGACCCCTCAGAGCAGCCCACTGCCTTCCTCCTCGCCCTTACTGTCCCTGCCCAAAGTGGCCAAACCTGTGGTGCCGCCGCTTACGCCAGAGCAATACGAGTACTACATGTACCAGGAGGTGGACACTGTCGACCTCACACAGCAGGTCAAAGAAAAACTCGCCAAGAACGGCATCTGCCAGCGCATCTTCGGGGAGAAGgTGCTGGGTCTCTCTCAGGGGAGTGTGAGCGACATGCTCTCTCGACCAAAGCACTGGAGCAAACTCACACAGAAGGGAAGGGAGCCGTTTATACGCATGCAGTTATGGCTGAACGGAGAGCTGGGACAGGCACTGATGCCAATGCCTGGACAGACACAAGAAATCACCCCCAAAACCTCGGCCAGCTGCAGTCCTGCCCCAGAATCCCCCCTGAGCTCGGCTGAGGAGTCTGTGAAGAGCCAGCAGGAGGAGCAGATGTGCCGATCCTCCGTCCAGGAGCCCAGCGAAGCCTCCGAGTCTCAGCCCGGGACGCCGCTGCCGCTGCCTCTGCCGGGACAGGCCGGTCTCAGCATTCAGGAGATGGTGGCCATGTCAGCCGAGCTGGACACGTACGTCATCACGAAAAAAGTCAAAGAAGTCCTCACTGATAACAACCTGGGCCAGCGTCTGTTCGGGGAGAGCATTCTGGGTTTGACGCAGGGCTCAGTGTCTGATCTGCTGGCTCGACCCAAACCCTGGCACAAGCTCAGCCTGAAGGGTCGCGAGCCGTTCGTGCGCATGCAGCTGTGGTTGAGCGACCCGCGCAACGTGGAGAAGCTGATGGACATGAAGCGCATGGAGAAGAAAGCCTACATGAAAAGGCGCCACAGCTCCATCGGTGAGAGTCATTCGCTGGAGAGCGGCTTGTCTGCAGCAGACCTGACACAGGGTGCCAGTCCCCAACACCTATCCCAGCAGCAGCCGCCGCAGCAGATGCAGCCTCAACAGCAGCAGCCCCAGCTGAAGAAACCCCGGGTGGTTCTGGCTCCGGAAGAGAAGGAAGCTCTGAAGCGGGCCTACCAGCAGAAGCCTTACCCCTCCCCTAAAACCATTGAGGAGTTAGCGAGTCAGCTCAACCTCAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGTATCCGGCGAGAGCTTTTTATCGAAGAGATCCAGGCAGCAGCAGGTGAAGGTGGATCTCCATCTGCACGGCCTGGAAAATCTGGAGGCGAGGGAGAAAACAGCTGCGACGGCACTGAGTCCGACAGCACGGCAGAAGGCCGACCGAGTGGCTCAGAGGAGCGCAAGGGCTTCCTGGAGAGCCCGGGCCTCGGCCACAGAGAAGAAGATGGCGAGGGCGAGTTTCCTAGTGCCTCGGGCACCAGCCGGCCACGAGGAGGCATCATAGACAGCCTGTTCGGCATCCCCGAGTCCATATCCGTCACCAATGCTGCCACGACCCCCTGCCGAAATCCAAAGGATAGCAGTCTACGCAAGAAGAAAGCAGCCAACCTCAACAACATCATCCACCGGCTGGAGAAAGCGGCGAACCGAGACGAGCCTCACGAATGGGAGTTCTGA

Function

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5868 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human CUX1 (cut like homeobox 1).

Ensembl:

ensembl_id ENSDART00000182065

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006083 lncRNA downstream 6397 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006082 lncRNA downstream 123051 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00005772 lncRNA downstream 225096 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006081 lncRNA downstream 311879 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005771 lncRNA downstream 652495 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006084 lncRNA upstream 1800 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00005338 lncRNA upstream 460835 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006085 lncRNA upstream 506376 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005339 lncRNA upstream 719342 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006086 lncRNA upstream 1039993 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00005319 mRNA downstream 12724 32881586 ~ 32890617 (-) True XLOC_002874
TCONS_00005317 mRNA downstream 23043 32856929 ~ 32880298 (-) False XLOC_002873
TCONS_00005318 mRNA downstream 25991 32866450 ~ 32877350 (-) True XLOC_002873
TCONS_00005316 mRNA downstream 25993 32854901 ~ 32877348 (-) False XLOC_002873
TCONS_00005315 mRNA downstream 51494 32809620 ~ 32851847 (-) True XLOC_002872
TCONS_00005324 mRNA upstream 83621 33240410 ~ 33251876 (-) True XLOC_002878
TCONS_00005325 mRNA upstream 97163 33253952 ~ 33265566 (-) True XLOC_002879
TCONS_00005326 mRNA upstream 112582 33269371 ~ 33297864 (-) True XLOC_002880
TCONS_00005327 mRNA upstream 149189 33305978 ~ 33343244 (-) True XLOC_002881
TCONS_00005328 mRNA upstream 210566 33367355 ~ 33379850 (-) True XLOC_002882
TCONS_00005308 other downstream 292572 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 292647 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 1798587 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2372084 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 3164233 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 220029 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 220212 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 220341 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 875494 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1170473 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

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