RNA id: TU2489287


Basic Information

Item Value
RNA id TU2489287
length 782
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G2177816
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33740716 ~ 33741839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCAGCGCTGGTCGTTGACACGAGTCTCCGTGTGCAGGGAGGCCGGCTCTGCACAGTGGATGGTGAAGCGAAGATGCAGCCAGCCGTCTGCGATCAGAAGCTCCAGGAAGTCACAGTTCCCTCCGTCGTCCAGGTAGAGCACCAGGGCCTTGCTGATGTTGGTCTTCAGAGCGAAGCTCAGCTGGCCTGTGGCCTTGGCTTCCCAGCGGCCGTACCGTGCCCACTGACCAGGGACTCCCTCGTACTCCAAGGCCGTGGCCATGACTGTCAACAGCAGCCCAGTCAATAGCAGGGGCCACACGGCCCGAACTTCACACCTCCCCTGTCTGCTTATCATCTTCCACTTCTGACCCTAATCCCTCAAACTAGGTCTCGTTGCTTTTAATCCACTACCGCTGGGAGAGAGGCCGAAATGATCTCCAGTCTACACTGTTGTTGTGTTTTCCCTAAAGTGTACAGCAATAATATGATTCAAATTCTTCTCTTTAGCTTTGCCTCTCTATCCTGATTCTCTTCTTAGCCTCTCCATTGAGTGGAAAAATTGGGAATTGTGTCACCTGTTATCCAGAGAAGCGGCTACCATAACGTTCTGGTGATATCATAGAATCCATATGTTTTGGAATCTAGGAACTAGCACTAAACATTTAAGAGTCTAGGAACTAGCACTAAACATTTAAGAATCTAGGAACTAGCACTAAACATTTAAGAATCTAGGAACTAGCACTAAACATTTAAGAATCTAGGAACTAGCACTAAACATTTAAGAGTCTAGGAACTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489250 lncRNA downstream 66533 33662387 ~ 33674183 (-) False G2177781
TU2489251 lncRNA downstream 74270 33664979 ~ 33666446 (-) True G2177781
TU2489224 lncRNA downstream 130430 33608940 ~ 33610286 (-) True G2177757
TU2489215 lncRNA downstream 143035 33595998 ~ 33597681 (-) True G2177748
TU2489202 lncRNA downstream 164936 33575504 ~ 33575780 (-) True G2177735
TU2489292 lncRNA upstream 4731 33746228 ~ 33746627 (-) True G2177820
TU2489294 lncRNA upstream 7171 33748668 ~ 33748886 (-) True G2177822
TU2489302 lncRNA upstream 20667 33762164 ~ 33764067 (-) True G2177830
TU2489304 lncRNA upstream 25013 33766510 ~ 33766721 (-) True G2177832
TU2489306 lncRNA upstream 32164 33773661 ~ 33774693 (-) True G2177834
XM_036967490.1 mRNA downstream 89589 33638137 ~ 33651127 (-) True pygma
XM_021591462.2 mRNA downstream 113445 33620043 ~ 33627271 (-) True slc22a6l
XM_021591460.2 mRNA downstream 113446 33620043 ~ 33627270 (-) False slc22a6l
XM_036968091.1 mRNA downstream 114785 33620043 ~ 33625931 (-) False slc22a6l
XM_036967713.1 mRNA downstream 123499 33615518 ~ 33617217 (-) True LOC110509437
XR_005040384.1 mRNA upstream 350812 34092309 ~ 34093015 (-) True LOC118945276
XM_021591473.2 mRNA upstream 422687 34164184 ~ 34171974 (-) False si:dkeyp-50d11.2
XM_021591474.2 mRNA upstream 422700 34164197 ~ 34171975 (-) True si:dkeyp-50d11.2
XM_036967457.1 mRNA upstream 477136 34218633 ~ 34226731 (-) False LOC110510130
XM_021591476.2 mRNA upstream 477136 34218633 ~ 34226881 (-) True LOC110510130
TU2489160 other downstream 228390 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 1096144 32643402 ~ 32644572 (-) True G2176363
TU2487110 other downstream 1307075 32432047 ~ 32433641 (-) False cpi1
TU2489480 other upstream 379985 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 597414 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1061694 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1061694 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 2220487 35961984 ~ 35962832 (-) True G2179862

Expression Profile