RNA id: TU2489739


Basic Information

Item Value
RNA id TU2489739
length 1404
lncRNA type antisense_over
GC content 0.47
exon number 11
gene id G2178219
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34452660 ~ 34455530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAGTACTACCGGACTCCCTGTTTGATGGAGTAGTTTAGGTGAGTTTTATCCGCAAACCAATAAACCCCTTTATAGTGAATGTGTTCATTAACCCCCCTTGGTTTTATGTGAGAAGTACAGAGTGAATGGTTAATTAAGCTACGTTTGAAATGATGTGACTCATACGCATGGCTGGATATCTACATTACAGTACAGGTACTACAGGCTCACATTGACAAAACCACTAAAATACAACACTAAAATGCCCGTAATAGTGAGAGATATCAACATCATATAAAGCTGTTATCATTTTTTATTGATAGTTCTTCCTATGAGGTATTCCAGTTTCTTCTTTGCTTTGGTCATCAGCCTTTCAATCTGGACAGCCATCAACAGCTTTGCTCTATTGAACTTTGCAGTCCCTCCTTCCTCGTCTTTCTTCTGCTGGGGGAATGTACTCAGCCTCAAGGGTAACATGCGTTCTTTACTCTCCCACCGGGAGACCTACATCTTGGGGTTTGGGGTTCATGAGGATCAAGGGGAGCTCCACCTGTACGTCACTGGCTGTGAGACCTCCCAACAAGCCTCCTGAAGACACCATCAAGTTGACCTTGATTTTGTAGGAGACCAAGATTCCCAACACTTCTTTATCCATACCGTCTCTCATAATAGTGTTGGAGGCTAGGTTTGTGTCCTCATCCTTCAGTCTGCCGTCCAGCGCCAGACCGCGCTTCTCCTTGTTGTCGGCCAGTAGGGGGATGATGGTGAGGGATTTATCAAATGTGCTATTGGCATCTATTGTCTCTCCAAACTCTTGACAAAGTACGGTTTTGGTGTATTTGTCCGCGGAGTAGAGCACCACATCTGTAGTCTGGTCAACTGTGACTTTAATTTTTGTCACTGTTTTGGTGGTTTCATTCTTGACTTTGACGTTGACATTGATCGGATCTCCATGGTAATAGAGCTCCTTATCCAGAGAGGCCTCCAGGTGGACAGGCTTGTCAGACATCATGAAGCTCTTGCAGATGTCAGCCTTGGGACCAGGAGCACCAGTTGCATCTGGAGCAAACTGGATCTTACGGACGATCAGACGGGCAGTGTCTTTCTTGTCAAGTTTCTCTTCTGGGTCTGCCACATCTGAAATGTAGGTCTTCACTTCAAAGTCCACACCGCAAGCCTTTCCAGCATCATCTGGTCCTGGCTGGAGTGTGACAGAGCAGGGAAGGTTTACGGGAATGTCGAAAGTGAAGGCATGGCCCTGCTCTCCTGCCTTCTTGAGCAGGCAGTCATGCATGGGAGTGAGGGTGGGTTTGTGGTCAGCAGCAGGGTACAACTGGAGGTGCTTGAACCAGATGTCTTTCCTGAAGGACAGTCCAATGACATCCAGGTCCTCACGGCCATAACGGAAAGCACAGGCCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489674 lncRNA downstream 96390 34355971 ~ 34356270 (-) True G2178162
TU2489669 lncRNA downstream 103507 34348887 ~ 34349153 (-) True G2178157
TU2489667 lncRNA downstream 108245 34344166 ~ 34344415 (-) True G2178155
TU2489656 lncRNA downstream 126993 34325439 ~ 34325667 (-) True G2178146
TU2489638 lncRNA downstream 148526 34303931 ~ 34304134 (-) True G2178128
TU2489749 lncRNA upstream 13860 34469390 ~ 34469626 (-) True G2178229
TU2489776 lncRNA upstream 72118 34527648 ~ 34527877 (-) True G2178254
TU2489785 lncRNA upstream 83760 34539290 ~ 34539733 (-) True G2178263
TU2489588 lncRNA upstream 116909 34572439 ~ 34573267 (-) True G2178090
TU2489586 lncRNA upstream 125316 34580846 ~ 34581441 (-) True G2178088
XM_021591486.2 mRNA downstream 68076 34362509 ~ 34384584 (-) True LOC110510139
XM_036968039.1 mRNA downstream 68081 34362509 ~ 34384579 (-) False LOC110510139
XM_021591487.2 mRNA downstream 78942 34362509 ~ 34373718 (-) False LOC110510139
XM_021591485.2 mRNA downstream 80398 34362509 ~ 34372262 (-) False LOC110510139
XM_021591482.2 mRNA downstream 110200 34338912 ~ 34342460 (-) False LOC110510135
trnas-gcu-266 mRNA upstream 90774 34546304 ~ 34546385 (-) True trnas-gcu-266
XM_036967276.1 mRNA upstream 91251 34546781 ~ 34565132 (-) False hif1al2
XM_036967275.1 mRNA upstream 91251 34546781 ~ 34565140 (-) False hif1al2
XM_021591498.2 mRNA upstream 91251 34546781 ~ 34565141 (-) True hif1al2
XM_021591507.2 mRNA upstream 164428 34619958 ~ 34629302 (-) True LOC110510152
TU2489664 other downstream 110847 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 305341 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 940334 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 1808088 32643402 ~ 32644572 (-) True G2176363
TU2487108 other downstream 2019019 32432220 ~ 32433641 (-) True cpi1
TU2489908 other upstream 347661 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 347661 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1506454 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 2048943 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 2051010 36506540 ~ 36507120 (-) True G2180120

Expression Profile