RNA id: TU2489994



Basic Information


Item Value
RNA id TU2489994
length 344
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G2178444
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34874436 ~ 34874930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTTTGGCGCATTGGGATCCTTCAGTGCCTTCTTGCCCCTTTTCCCAGGAGGACCATAGCTCGTCATTTCCGAATCATAGCGAGCTTTGTCCTGCTTGGCCTGGTCCTCAAACTTTGACTTCTCCTTTGGAGACATTGTCTTCCATCTTCCAGAGCACTTCTTAGAAAACTCTGAAAAGTTGACTGGGATCTCTGGATTCTTATTTTTGTGTTCTTCTCGGCAGGTTTGAACAAAGTAGGCATAGGCAGACATCTTGCCCTTCGGCTTACGAGCGTCACCTTTGGCCATTCTGAAAAATGGTGGATGTTCTCTTGCACCACCAGAATATCTCGTCCACCAGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2489990 lncRNA downstream 3158 34871049 ~ 34871278 (-) True G2178440
TU2489962 lncRNA downstream 34877 34838735 ~ 34839559 (-) True G2178421
TU2489909 lncRNA downstream 65054 34792330 ~ 34809382 (-) False G2178372
TU2489929 lncRNA downstream 91733 34782470 ~ 34782703 (-) True G2178390
TU2489928 lncRNA downstream 92185 34781859 ~ 34782251 (-) True G2178389
TU2490009 lncRNA upstream 21223 34896153 ~ 34896467 (-) True G2178458
TU2490013 lncRNA upstream 24674 34899604 ~ 34899849 (-) True G2178462
TU2490014 lncRNA upstream 25346 34900276 ~ 34900493 (-) True G2178463
TU2490231 lncRNA upstream 50712 34925642 ~ 34929661 (-) True G2178667
TU2490279 lncRNA upstream 100944 34975874 ~ 35016990 (-) True G2178698
XM_021591527.2 mRNA downstream 11933 34851196 ~ 34862503 (-) True LOC110510165
XM_036967951.1 mRNA downstream 11992 34851196 ~ 34862444 (-) False LOC110510165
XM_036967952.1 mRNA downstream 12038 34851196 ~ 34862398 (-) False LOC110510165
XM_021591518.2 mRNA downstream 59497 34809871 ~ 34814939 (-) True LOC110510161
XM_021591513.2 mRNA downstream 147204 34715939 ~ 34727232 (-) True LOC110510156
XM_021591532.2 mRNA upstream 90199 34965129 ~ 34979664 (-) False LOC110510171
XM_021591534.2 mRNA upstream 90624 34965554 ~ 34979665 (-) False LOC110510171
XM_021591535.2 mRNA upstream 90624 34965554 ~ 34979665 (-) False LOC110510171
XM_021591536.2 mRNA upstream 90624 34965554 ~ 34979665 (-) False LOC110510171
XM_021591537.2 mRNA upstream 90624 34965554 ~ 34979665 (-) False LOC110510171
TU2489908 other downstream 65133 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 65133 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 532623 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 727117 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1362110 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 1087054 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1629543 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1631610 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 1659167 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 1659167 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile