RNA id: TU2490299


Basic Information

Item Value
RNA id TU2490299
length 468
lncRNA type intronic
GC content 0.44
exon number 4
gene id G2178715
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35009192 ~ 35010170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtacagacagacagtacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacaggacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagtacagacagacagacagtacagatagacagacagacagtacagacagacagacagacatttgtacagacagtatagacatacatacagacagacagacagacagacagacagacatacagacagacagacggacatttgtacagacagtatagacatacatacatacagtacatacattcagtacagacagacagacagacagacagggacattcacaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtcattttcatcataggtacacttcaactatggcagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2490231 lncRNA downstream 79531 34925642 ~ 34929661 (-) True G2178667
TU2490014 lncRNA downstream 108699 34900276 ~ 34900493 (-) True G2178463
TU2490013 lncRNA downstream 109343 34899604 ~ 34899849 (-) True G2178462
TU2490009 lncRNA downstream 112725 34896153 ~ 34896467 (-) True G2178458
TU2489994 lncRNA downstream 134262 34874436 ~ 34874930 (-) True G2178444
TU2490324 lncRNA upstream 73530 35083700 ~ 35084289 (-) True G2178733
TU2490376 lncRNA upstream 154722 35164892 ~ 35202930 (-) True G2178783
TU2490425 lncRNA upstream 220286 35230456 ~ 35230691 (-) True G2178832
TU2490472 lncRNA upstream 282257 35292427 ~ 35292651 (-) True G2178878
TU2490765 lncRNA upstream 311788 35321958 ~ 35322371 (-) True G2179137
XM_021591537.2 mRNA downstream 29527 34965554 ~ 34979665 (-) False LOC110510171
XM_036967716.1 mRNA upstream 339195 35349365 ~ 35368562 (-) True LOC118945291
XM_021591545.2 mRNA upstream 389166 35399336 ~ 35421810 (-) False LOC110510176
XM_021591544.2 mRNA upstream 389166 35399336 ~ 35421812 (-) True LOC110510176
XM_036968005.1 mRNA upstream 411796 35421966 ~ 35454523 (-) False LOC110510173
XM_036968004.1 mRNA upstream 411796 35421966 ~ 35454525 (-) True LOC110510173
TU2489908 other downstream 199889 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 199889 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 667379 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 861873 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1496866 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 951814 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1494303 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1496370 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 1523927 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 1523927 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile