RNA id: TU2490376


Basic Information

Item Value
RNA id TU2490376
length 397
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G2178783
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35164892 ~ 35202930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAGAGAAAaatcaacaacaagtgggacacaatcatgaagtggaatgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggagtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaatgttttcccattcctccttgcaaaacatctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2490324 lncRNA downstream 80603 35083700 ~ 35084289 (-) True G2178733
TU2490244 lncRNA downstream 140321 35003993 ~ 35024571 (-) True LOC110510172
TU2490279 lncRNA downstream 147902 34975874 ~ 35016990 (-) True G2178698
TU2490297 lncRNA downstream 154722 35009192 ~ 35010170 (-) False G2178715
TU2490299 lncRNA downstream 154722 35009192 ~ 35010170 (-) False G2178715
TU2490425 lncRNA upstream 27526 35230456 ~ 35230691 (-) True G2178832
TU2490472 lncRNA upstream 89497 35292427 ~ 35292651 (-) True G2178878
TU2490765 lncRNA upstream 119028 35321958 ~ 35322371 (-) True G2179137
TU2490778 lncRNA upstream 143290 35346220 ~ 35346532 (-) True G2179150
TU2490783 lncRNA upstream 160908 35363838 ~ 35364079 (-) True G2179155
XM_021591537.2 mRNA downstream 185227 34965554 ~ 34979665 (-) False LOC110510171
XM_036967716.1 mRNA upstream 146435 35349365 ~ 35368562 (-) True LOC118945291
XM_021591545.2 mRNA upstream 196406 35399336 ~ 35421810 (-) False LOC110510176
XM_021591544.2 mRNA upstream 196406 35399336 ~ 35421812 (-) True LOC110510176
XM_036968005.1 mRNA upstream 219036 35421966 ~ 35454523 (-) False LOC110510173
XM_036968004.1 mRNA upstream 219036 35421966 ~ 35454525 (-) True LOC110510173
TU2489908 other downstream 355589 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 355589 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 823079 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1017573 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1652566 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 759054 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1301543 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1303610 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 1331167 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 1331167 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile