RNA id: TCONS_00006084


Basic Information

Item Value
RNA id TCONS_00006084
length 1530
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_002877
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33158589 ~ 33164573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acaatggcCTCCTCACATCTCTGCTTGTCTCTTCATTATGTTCATTTGCCATGTCTTTGCATCTCCATAATTAAAATCTAATCCTGCATGCCGACTTTTTAAACGAGGACTAGCCTCAAGAGGAGGCTTATTTGATTAAGGAAGGGGAAGGCTGGAGGAGGGAGTCAGGCAGGAGACACGGCTCTTAATTGTGCTCCCATGAGGCGCGCGCTCGCCCGGGTGCAGAGAGGCGGGGCTGCGGGCTCACGGGCTCCGGTGGGCCTGAAAAAACAAACCGCCGGTGGGACCACAACTCTCCTGCGCGGCTCTCCCGGTGTCTCGAAGGAGGAACCGAGGGGTGGGGCGATGATGAGGAGCTGTGGGACCCGACGAGCTTCCTGGAGGGTCTGAGCCGAGCGTGTGCGGCGGGAATCACGGCTGCTTTACCGATGAACCGCGAAACCAATGGAGCTGAAGAGACTGTAGAGTGGAGcttaatccctttatttttgggccgtcacagtggaatgaaccgccaactcatccagcatatgttttatgcagcgaatgcccttccagctgcaacccatcacccaTCAGTTTCTATGTATTTcctaaactggagcacccagaggagaccaaccacacacactacggacaatttagcttatccaattcacctataccccctgtctttggacttgtggggaaaaccggagcatccggaggaaacccacacaaacacgggaagaacatgcaaatttcacactgaaatgccaactgaaccagccgaggctcgaaccagcgacctttttgctgtaagacGACcaatacccactgcgccacccataATTCActttaataatcataattcacTATTATTTTTTCTATCAATAATTATATTttcatcaaatcaaatttaatCACAGGCTGCCATTTAAGTAGTTCATATATTGAAAATGTATATATCAAATCTAAAATTATTGCTATTAGACTTTATATTCGACACGAGTATGCTTACTAGTGCtgttgtctgtttttattatcaACCGTTGAAATTATATTAGTAAAAAATGAAATCATTGTTGATATCAGTAATTGCATTGTCACTATAACACTGCTATGCTCAGTAAGTCCTGACAACATGTTATTGAGTTCAGGAATCCACATTTTTAGTAACATGTTTCTTGATAACAAAAATGATATTCAAATTGTTTTTGTACTAGTAAGAAAAATGTCAACAACTGAATTTAAATGGCAGCCTACTGAATTTTGATATCAAGAACGTAtcctacaaataaataaaagtgaaaacagCTTGCCATATAGCGGCACTTGATTATCTTCCACAGCTTCTGCTTCATTTATTGTGTTACATGCATTTGTCACTTTTCTTTTGCATTGTACCATAAAGCATATGTATTATTATGACCGCCTGCGATATATTACCTCATTAACACTTAGATTATTATGCGTTGTTTTATACTGTTGCCTGTGAAACATTGTTTCTGGATTCTCACAatgataataaagtaataaaaaggaTTTCTT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0022612 gland morphogenesis biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048513 animal organ development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016859 cis-trans isomerase activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006083 lncRNA downstream 261645 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006082 lncRNA downstream 378299 32779880 ~ 32780290 (-) True XLOC_002871
TCONS_00005772 lncRNA downstream 480344 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00006081 lncRNA downstream 567127 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005771 lncRNA downstream 907743 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00005338 lncRNA upstream 453051 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006085 lncRNA upstream 498592 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005339 lncRNA upstream 711558 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006086 lncRNA upstream 1032209 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00006087 lncRNA upstream 1587737 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005323 mRNA downstream 1800 32903341 ~ 33156789 (-) False XLOC_002876
TCONS_00005322 mRNA downstream 1800 32903341 ~ 33156789 (-) False XLOC_002876
TCONS_00005321 mRNA downstream 1800 32903341 ~ 33156789 (-) True XLOC_002876
TCONS_00005320 mRNA downstream 237899 32898533 ~ 32920690 (-) False XLOC_002876
TCONS_00005319 mRNA downstream 267972 32881586 ~ 32890617 (-) True XLOC_002874
TCONS_00005324 mRNA upstream 75837 33240410 ~ 33251876 (-) True XLOC_002878
TCONS_00005325 mRNA upstream 89379 33253952 ~ 33265566 (-) True XLOC_002879
TCONS_00005326 mRNA upstream 104798 33269371 ~ 33297864 (-) True XLOC_002880
TCONS_00005327 mRNA upstream 141405 33305978 ~ 33343244 (-) True XLOC_002881
TCONS_00005328 mRNA upstream 202782 33367355 ~ 33379850 (-) True XLOC_002882
TCONS_00005308 other downstream 547820 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other downstream 547895 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005293 other downstream 2053835 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 2627332 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 3419481 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005329 other upstream 212245 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 212428 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 212557 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005343 other upstream 867710 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005358 other upstream 1162689 34327262 ~ 34327394 (-) True XLOC_002902

Expression Profile

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