RNA id: TU2491554


Basic Information

Item Value
RNA id TU2491554
length 1456
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2179806
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35838398 ~ 35839853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGAAGCCTGGACGCTGCTGTTATGTGCAAAGAGAAAGACCTTCGGGTTGTCCTCCCACCATTCCTGGTACCCGCCATGGGATTTGTCTTGAGGGTCTGGTAGGTCCATTCATCCAAACCTGGAGTCACCATACACCATTACATACACAATCACATTATTTACAACTCACTGTACTATTAGTGTCAATTTTGAAAAAGCTATAAATGACAGGAGGCCTATGAGAAACAACTACAACTATTACATTATTAACCACTAACATGTAAGCTAACATTGACTGAAACCAACTAGCCTAGAGCTAGCTAGCGCTTAACTAAGCTGGGTTTGGCTAGTGTAATATACTAGCACACTGAGATAGGGATGCGGGTAGAAGAACCAAGTTTATCAGAGGTCACGGGTCAAGTGCAAGTACAGATGACCACATGTAGTAGTTAGTAACAGCGCCAGCCTCAGGCACTCAAGGTAAATACTGTACATGAACAGACATGACATCTCCCTTTCATTAGACTTTTTGAACATTTATTTTTGTATGCTCTTTCAACTCAGTGTTTCACATCACAATATGCAATTGTTAAGCAATATATAACATAACATGGACATCACAATTGTCAGTCTTTTCAGTACTGGTAACGTTTTGGCATTCTGATAAGTCTTCCATAATGAGTTGATTTCACTGTTGTGTCAGTGTTTAACATTGTTGCTTTCCTCTGTTTGTTTTGGTGTTGTTGGTGCTGGAGAACACACAGGTGAGTAGTTTTCTTCCAGGCTGACACTTGTTTCAGGTTCTCTTTCCACAGGATAAGGTCCATTATGGTTTCTGAGTGTCTCTCTGGGTGTGTTGTTTCATGTGTCTCTGGTTCCTTCTGTAGATTCTCTCTTGTTTGGTGTTTGTACTATGTATAACCTTGGCTGGTCATGTTTTCCAAGTACAATTGCTGGTTGCCATTTGTTGTCTTGTCTGATCCTGACTCGTTCTCCTTCCTTCATGACAGAAAGTTTAGGTGTGCCTTGGTCACAGTAGTGTTTTTGTCTCTGTTGTCTGCTTGTGAGACGGCTCCTGAAATGCTGATAGAGTCTCTCTGTTGTCTGCTTGTGAGACAGCTCCTGAAATGCTGATATAGTCTCTCTGTTGTCTGCTTGTGAGACAGCTCCTGAAATGCTGATAGAGTCTCTCTGTTGTCTGCATGTGAGACGGCTCCTGACATGCTGATAGAGTCTCTCTGTTGTCTGCTTGTGAGACGGCTCCTGACATGCTGATAAAGTCCTGGCTTTAACAATCTCTTTAATGTCGGAATCTTTGTCTTCAGCCTTCTTCCCATTAGTAGTTGTGCAGATGAGACCTACTTCAACCAGGGGTGTGTTTCTGTACTCAAGGAGAGCTATGTAAGGATCTCCGTTGCTGTTTTGTGCTTTTTTCAACTTCCACCATAATgtgcaaataaatacataaaaaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491542 lncRNA downstream 21036 35804621 ~ 35817362 (-) False LOC110510228
TU2491540 lncRNA downstream 21036 35815284 ~ 35817362 (-) True LOC110510228
TU2491048 lncRNA downstream 34804 35803344 ~ 35803594 (-) True G2179379
TU2491045 lncRNA downstream 36829 35801334 ~ 35801569 (-) True G2179376
TU2490997 lncRNA downstream 56380 35778751 ~ 35782018 (-) True G2179330
TU2491579 lncRNA upstream 20147 35860000 ~ 35860404 (-) True G2179829
TU2491551 lncRNA upstream 34368 35874221 ~ 35905514 (-) True G2179803
TU2491538 lncRNA upstream 49129 35888982 ~ 35892698 (-) False G2179798
TU2491539 lncRNA upstream 49129 35888982 ~ 35892698 (-) True G2179798
TU2491597 lncRNA upstream 57372 35897225 ~ 35897989 (-) True G2179847
XM_021591616.2 mRNA downstream 20906 35806463 ~ 35817492 (-) False LOC110510228
XR_002471541.2 mRNA downstream 20927 35815259 ~ 35817471 (-) False LOC110510228
XM_021591551.2 mRNA downstream 314331 35507047 ~ 35524067 (-) False LOC110510180
XM_036968003.1 mRNA downstream 314331 35507047 ~ 35524067 (-) True LOC110510180
XM_021591553.2 mRNA downstream 332682 35495285 ~ 35505716 (-) True ik
XM_036967330.1 mRNA upstream 1290 35841143 ~ 35871509 (-) False LOC110510227
XM_036967329.1 mRNA upstream 1290 35841143 ~ 35871517 (-) False LOC110510227
XM_021591615.2 mRNA upstream 15593 35855446 ~ 35871513 (-) True LOC110510227
XR_002471540.2 mRNA upstream 48138 35887991 ~ 35892732 (-) False LOC110510226
XR_005040355.1 mRNA upstream 48138 35887991 ~ 35892734 (-) True LOC110510226
TU2489908 other downstream 1029095 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1029095 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1496585 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1691079 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 2326072 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 122131 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 664620 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 666687 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 694244 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 694244 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile