RNA id: TU2491539


Basic Information

Item Value
RNA id TU2491539
length 1205
lncRNA type read_through
GC content 0.44
exon number 11
gene id G2179798
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35888982 ~ 35892698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgttCTTCACTCCGTTGAGTCCTGTGGATGATTTGCTGAAGCAGAACGTCCTCTGCATTATGGAAGATGATATGTTAGAAATGCTTCTTTAGTATCTACTTATTGGTATAGTGATGTACCTTAAGTCTTGCCCTGGTTATTAGTTAAGTAGTTAACAGTAGCTACTTTGGAGCATGGGGACTTGCAGAACCATGCACGTGGGCAACTCAACGTTTTAAAACCATGCCGTGCTGTCTGTATCTGGCCTATGGACTGAACTGAGGCCGTACTCGCCAATGACTGCGCACATGGCAGgcGCTGCCCGGGTGACTTGATTGCAAGGAGACTTAACCTCGAAAGGTGTGGAACTGAATCAATGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGCAACAGAGCTGTGGATGGTGTGGAGGCATCTGAAAAGATTTGGGAGACTACTCCCTCGTGGCCTGTGGCTGAACCATACACATGAAGCCATACACACGGCAGGAGACTCCACCCCAAAGTACTTAATGGTGGAGACATCACCTCAAAAGGTGTGAAGCTGCCCCAATGAGTTGATGGCATGGAGACTTCATCTGCCAAGGTGTGGAACTGACACAAGGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGGAACTGAACCAACGCTGTGAAAGGTAGGCTGCCTTTGCATAATATCCCTGCAGTCTCAGAACTGGATATGTTGACTGGGGTAAGGCTTTTCACCCTGGCAACAAGCTGCCTTGTGGTCAGCTGGAAGGAATAATTGCTTATTTATGCTATGATGAATACTAAACTGAAACAGCTGGAATTACCGGCAGATTGTATAGTGGTGACATTCGGTTTTCTGAGACATTAGTACACGcttcaccattttttttttacttcccaTTTATTCAGCTAATGGCAGTCGTTTTGTTTCAGGTGTTCCTCATCTGATGCCCCTTGCTGATTTTCAGCCCCAACCTACCCTTCAGGTGCACAGTCACCCGATCACAATTTTGAAGTGCCTTTCCTATCGTCTTGAGTTTTGTTCAGTGGTGATATTTAGTTCTGAACTTAGAAGTGGTGTTTATGGGCCCTCACTTTGAGTGGGATATTTATAAAATGTGTAAATGTGACACTTCACCTATTTTAAGATGTAAAAAAGTATAACTGTATATGCTGAATAATTAAAGTTTTTAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491579 lncRNA downstream 28578 35860000 ~ 35860404 (-) True G2179829
TU2491554 lncRNA downstream 49129 35838398 ~ 35839853 (-) True G2179806
TU2491542 lncRNA downstream 71620 35804621 ~ 35817362 (-) False LOC110510228
TU2491540 lncRNA downstream 71620 35815284 ~ 35817362 (-) True LOC110510228
TU2491048 lncRNA downstream 85388 35803344 ~ 35803594 (-) True G2179379
TU2491597 lncRNA upstream 4527 35897225 ~ 35897989 (-) True G2179847
TU2491600 lncRNA upstream 21012 35913710 ~ 35914311 (-) True G2179850
TU2491608 lncRNA upstream 60706 35953404 ~ 35955677 (-) False G2179856
TU2491609 lncRNA upstream 60706 35953404 ~ 35955677 (-) False G2179856
TU2491610 lncRNA upstream 60706 35953404 ~ 35955677 (-) False G2179856
XM_036967329.1 mRNA downstream 17465 35841143 ~ 35871517 (-) False LOC110510227
XM_021591615.2 mRNA downstream 17469 35855446 ~ 35871513 (-) True LOC110510227
XM_036967330.1 mRNA downstream 17473 35841143 ~ 35871509 (-) False LOC110510227
XM_021591616.2 mRNA downstream 71490 35806463 ~ 35817492 (-) False LOC110510228
XR_002471541.2 mRNA downstream 71511 35815259 ~ 35817471 (-) False LOC110510228
XM_036968144.1 mRNA upstream 18330 35911028 ~ 35950373 (-) True supt6h
XR_005040496.1 mRNA upstream 42662 35935360 ~ 35936556 (-) True LOC118945335
XR_005040497.1 mRNA upstream 44046 35936744 ~ 35937921 (-) True LOC118945336
XM_036968055.1 mRNA upstream 76758 35969456 ~ 36030387 (-) False LOC110509452
XM_036968056.1 mRNA upstream 76758 35969456 ~ 36032625 (-) True LOC110509452
TU2489908 other downstream 1079679 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1079679 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1547169 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1741663 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 2376656 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 69286 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 611775 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 613842 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 641399 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 641399 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile