RNA id: TU2491600



Basic Information


Item Value
RNA id TU2491600
length 263
lncRNA type intronic
GC content 0.49
exon number 2
gene id G2179850
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35913710 ~ 35914311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGAACACAACATTAGTCtctgcggagggagggagggagagagcagcagagggtctgcctctcacggtctctgctctctccttcctttcctctgatTAGACTTGACCAGAAAGGGGAACACAGTTCACCTGGTGGTTGAGGCTCGAATCGCACCGCATCTGCATTAGTCAGGCACAAATTCATGTTCcaatgaccagagaaagtgaaatactCCTCGGTATTAAAATATCCATGACGAGCTTCTAATAATCTTAAAAGCGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2491551 lncRNA downstream 8196 35874221 ~ 35905514 (-) True G2179803
TU2491597 lncRNA downstream 15721 35897225 ~ 35897989 (-) True G2179847
TU2491538 lncRNA downstream 21012 35888982 ~ 35892698 (-) False G2179798
TU2491539 lncRNA downstream 21012 35888982 ~ 35892698 (-) True G2179798
TU2491579 lncRNA downstream 53306 35860000 ~ 35860404 (-) True G2179829
TU2491608 lncRNA upstream 39093 35953404 ~ 35955677 (-) False G2179856
TU2491609 lncRNA upstream 39093 35953404 ~ 35955677 (-) False G2179856
TU2491610 lncRNA upstream 39093 35953404 ~ 35955677 (-) False G2179856
TU2491611 lncRNA upstream 39093 35953404 ~ 35955677 (-) False G2179856
TU2491612 lncRNA upstream 39093 35953404 ~ 35955677 (-) False G2179856
XR_005040355.1 mRNA downstream 20976 35887991 ~ 35892734 (-) True LOC110510226
XR_002471540.2 mRNA downstream 20978 35887991 ~ 35892732 (-) False LOC110510226
XR_005040805.1 mRNA downstream 21326 35892318 ~ 35892384 (-) True LOC118945690
XR_005040821.1 mRNA downstream 21994 35891642 ~ 35891716 (-) True LOC118945706
XR_005040818.1 mRNA downstream 22264 35891372 ~ 35891446 (-) True LOC118945703
XR_005040496.1 mRNA upstream 21049 35935360 ~ 35936556 (-) True LOC118945335
XR_005040497.1 mRNA upstream 22433 35936744 ~ 35937921 (-) True LOC118945336
XM_036968055.1 mRNA upstream 55145 35969456 ~ 36030387 (-) False LOC110509452
XM_036968056.1 mRNA upstream 55145 35969456 ~ 36032625 (-) True LOC110509452
XM_036968291.1 mRNA upstream 210704 36125015 ~ 36145695 (-) False nf2b
TU2489908 other downstream 1104407 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1104407 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1571897 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1766391 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 2401384 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 47673 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 590162 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 592229 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 619786 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 619786 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile