RNA id: TU2491608


Basic Information

Item Value
RNA id TU2491608
length 2246
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G2179856
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35953404 ~ 35955677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAACATCCATTTAATCTGAGGTATCTATTACAATCATGTACAAGTCTTGTGAAAACAAACCTTTGTGTTGAAATGAACACTCACAGACACCTGATAGAAAACACTTTGTAAGACTCACGTCAGACCAGACAGGCTGTAGCTGTCAACCCCTGGGACAATGACAGTGTggctggggtcaattccaatCCAATTCTGTTAGTTCTAGAAGGTGAATTGAGAAATTCTAGACTCAAAAAGTGCCTTGCATTTTCAACGGGGGACGTTCCTTTCTGTTCCTCAATTGGAATTATGATTTAGGTTCTGAATTTCCTGAATGGAATCTACTCCTACCACTGACTGACATAATACTGTAGTGGACAGAGAATTATGGTACTCTTCATGTTTCAGCTTAGTCAATGGAAGGGATATGTAATACTGTATGGACTTAAACTGAAATCAAGTCAAACAAAGACACCCTACTTGTTCATGGTAAAGAAGAGAATTGTGGGGATAGGCAGTGTGCTTAGGATTCAAATGTTTCTTTAATTAAAACGGTTCAAACTGCTCCTCTTTATTGATACGACACTTGTTTGAATAGTAGAGAGAAATCGATAATGTAATAAAAGGCACCGTAACAAGGCTGTTGTTTTTCGTACGTTTGTAGATGCAcaatactttcttttttttaatttttattttttttataaacacTGGCCTCCATTTAGCGTTTCTGTGCACAATCAACACAAACCTGCAGAATTGATATGGACCGTAGTCTGTTGTTGATCATATCAGGGGACCAATGAAGTCATATTTACCCCATTCTATAACCAGTCAGACACGGGGCACCATCTTAGAGGCACTAGCAAAATGGCTATGTAGCACCTCTGACATACAGAACAATACAATCACTAGCTGTTTTTGTTCTGGTGTCTCACATACCTTTACATGTCTATGTTGAAGTACCACGTTGGGAGGAGGTGTGTGGAGGGGAAATAGAAAATTGTATTTACCACATCTTGTAGCAGCATTCGTTTAGTGTATCAAATAGTCTCTGTTGATGAGGTCAGGTGACAGAGATTGGATTGGTCAAAGAGTTCTGTAGTTGTCCTGGCAACCCCTAGATTAGATCCACTGTGCGTGAGAGTGTCCTCAAAACAGAGGGAGTTGAGTAAGAGACAGGTAGGCAGACAACTAAGTTGGGTTGGATACAGGGGGCCAGGGGCCAGAGTAGATCACAACTCTGGGTccggggggggcgagagagagacaacagggaaGAAAATGGTATATAGAGCCAGGTCAGGTTGATTGATAATCAAAACTATTGTGTAGAGGATGGCTGTAGTCAGTCCGTGCATAGAGGATGGCTGTAGTCAGTCCGTGCGTAGAGGATGGCTGTAGTCAGTCCGTGCGTAGAGGATGGCTGTAGTCAGTCTGTGTGTAGAGGATGGCTGTAGTCAGTCCGTGCGTAGAGGATGGCTGTAGTCAGTCCGTGCGTAGAGGATGGCTGTAGTCAGTCCGTGCGTAGAGGATGGCTGTAGTCAGTCCGTGCGTAGAGGATGGCTGTAGTCAGTCCGTGCGTAGAGGATGGCTGTAGTCAGTCTGTGCGTAGAGGATGGCTGTAGTCAGTCTGTGTGTAGAGGATGGCTGTAGTCAGTCTGTGTGTAGAGGATGGCTGTAGTCAGTCTGTGCGTAGAGGATGGCTGTAGTCAGTCTGTGCGTAGAGGATGGCTgtagtcagtctgtgtgtgtagaggatggctgtagtcagtctctgtgtgtgtagaggatgGCTGTAGTCAGTCTGTGCGTAGAGGATGGCTGTAGTCAGTCTGTGTGTAGAGGATGGCTgtagtcagtctgtgtgtgtagaggatggctgtagtcagtctgtgtgtgtgtagaggatgaCTGTagtcagtctctgtgtgtgtagaggatgGCTGTAGTCTGATTGAATCAGAACTCTGTGTGTAGAGGATGGCTGAAGTCCTTGTTCCCTAGTGGGCTTTCACTGGGCTTCATATAAACCCCCTCCATGGCCCTCCACAGGCTGTGCTGGCTGGGACCCATCATGGCGTGCACTTCCCTCTGCCCGTGGATGGGCCGGCCGTACTGCTCCCCTGTAATCGATAGCAACGCATCGGTGGAGGCGTGCTGGAAGCGGACAGCCTCCTCGCGCTGCCACACCGCCCCTCCACACTGCACCGTCCACTCATCCAGGTGGTCCCCCTCGCCCTCCTCACCAAACGCACTCACCtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491600 lncRNA downstream 39093 35913710 ~ 35914311 (-) True G2179850
TU2491551 lncRNA downstream 47890 35874221 ~ 35905514 (-) True G2179803
TU2491597 lncRNA downstream 55415 35897225 ~ 35897989 (-) True G2179847
TU2491538 lncRNA downstream 60706 35888982 ~ 35892698 (-) False G2179798
TU2491539 lncRNA downstream 60706 35888982 ~ 35892698 (-) True G2179798
TU2491620 lncRNA upstream 5527 35961204 ~ 35962276 (-) True G2179861
TU2491667 lncRNA upstream 83726 36039403 ~ 36096507 (-) True G2179902
TU2491690 lncRNA upstream 124707 36080384 ~ 36080677 (-) False G2179924
TU2491691 lncRNA upstream 124707 36080384 ~ 36080677 (-) True G2179924
TU2491735 lncRNA upstream 200538 36156215 ~ 36158086 (-) False G2179961
XM_036968144.1 mRNA downstream 3031 35911028 ~ 35950373 (-) True supt6h
XR_005040497.1 mRNA downstream 15483 35936744 ~ 35937921 (-) True LOC118945336
XR_005040496.1 mRNA downstream 16848 35935360 ~ 35936556 (-) True LOC118945335
XR_005040355.1 mRNA downstream 60670 35887991 ~ 35892734 (-) True LOC110510226
XR_002471540.2 mRNA downstream 60672 35887991 ~ 35892732 (-) False LOC110510226
XM_036968055.1 mRNA upstream 13779 35969456 ~ 36030387 (-) False LOC110509452
XM_036968056.1 mRNA upstream 13779 35969456 ~ 36032625 (-) True LOC110509452
XM_036968291.1 mRNA upstream 169338 36125015 ~ 36145695 (-) False nf2b
XM_036968287.1 mRNA upstream 169338 36125015 ~ 36145697 (-) False nf2b
XR_005040526.1 mRNA upstream 169338 36125015 ~ 36145697 (-) False nf2b
TU2489908 other downstream 1144101 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1144101 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1611591 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1806085 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 2441078 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 6307 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 548796 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 550863 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 578420 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 578420 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile