RNA id: TU2491735


Basic Information

Item Value
RNA id TU2491735
length 1827
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2179961
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36156215 ~ 36158086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATAAAGACAATTGACATACATGATGATTACAACAGCTCAAGGCTCATAAATGACTACCTTATGAAAAAAAAACCGAAAAAAAAAACCAGACAGTATACGATTACAAATAGTTAAAGAAACATTATCAACAACGATACAAAAGAAATGCTCTTACCCCGATTCCATTGATCACCAATTTTCAATGTATGTTGCATTTTGGGGATACAAAATTGTCTGACTTGCATCTCACCGTGTCCACCTCCAGAATTACTCTGCATTACTCATGCAACTTTACTTGAGCAACTTCTGAAGCAACAGGTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCAACAGGTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAACTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAGCTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAACTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAACTGGCTTGTCTGACGAAGACTCTACTACAACTTCTGAAGCTACAACTGGCTTGGCTGACGACAACTTCTCACAAACTTTGATGCCTATAAATCCAGGCTATTTTGTTATATCAGTCAAACTATCAAATACAACTTGTACATGATTGATCATAATTAAATACGTTTGTTGTTGATATCTCCAAAGACAACACAGGTCGTTGAAGTTTGACAAAAAAGGGCTAGCATAAAGCTAATGCTAAATTACTTTAAAATTCTTCTTCTCATGAACCGTAACTCAGATTCTTTCAATATTTGGTATATAGACATTCTGTAATGGCCACTAGCTAAAATGGCGCAGTTCGGAACAACACGAACGTTAGCCCTGATTTCATTTTTCTGTGGATGATCTTCACTAGCTAACGTCGCCATAACATTGTCTACAAGCGTGTTTGAGGGGATTTCTATTGGATAAGCATTTTCTAGGCATCTTTATCTTTGGAATAGAAGCTGCCTTCAAAGATGGCCGCTCAATGCCAATGTAGGGCGCCACTGTCACAGACTGTACAGGTGTGTTACTATACAGGGGTGTTACTGTGATGTCACTGTTATGGCCTGTACAGGTGTGTTACTGTACTGGGGTGTTACTGTACAGGTGTTACTGTACAGGGTTGTTACAGGTCTGTTACTGTGATGAGGTCAATGTGATACGATACAAtatactttattgtccatttacATGGACAAATAATTTACATGGAAATTATTTTGGCAAAACAAAAGTGTTTGTGATAATGTCACTGTGATGACTTCCTGTAAACATACACCACTCCAGGTATGTACCCCTTCTCCGGCTCCGCTACGGCTTTCTCCCAGTCCTCCACCTCTGTGATCGCCACGTGACCCCAGAGCCCCGCCCCCTCCATCAGCGCCAGCTCATGCTCCAGCGCAGCCTTGTACTCCAGGTTGTCATGGTTACCTCTGGTTGTCATGCAGACGTAACCACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491667 lncRNA downstream 59708 36039403 ~ 36096507 (-) True G2179902
TU2491690 lncRNA downstream 75538 36080384 ~ 36080677 (-) False G2179924
TU2491691 lncRNA downstream 75538 36080384 ~ 36080677 (-) True G2179924
TU2491620 lncRNA downstream 193939 35961204 ~ 35962276 (-) True G2179861
TU2491610 lncRNA downstream 200538 35953404 ~ 35955677 (-) False G2179856
TU2491823 lncRNA upstream 138424 36296510 ~ 36296984 (-) True G2180042
TU2491843 lncRNA upstream 172426 36330512 ~ 36330737 (-) True G2180062
TU2491854 lncRNA upstream 200074 36358160 ~ 36359289 (-) True G2180066
TU2491855 lncRNA upstream 201314 36359400 ~ 36377438 (-) True G2180067
TU2491875 lncRNA upstream 237384 36395470 ~ 36395789 (-) True G2180086
XM_036968288.1 mRNA downstream 8992 36125015 ~ 36147223 (-) True nf2b
XM_036968289.1 mRNA downstream 10316 36125015 ~ 36145899 (-) False nf2b
XM_036968287.1 mRNA downstream 10518 36125015 ~ 36145697 (-) False nf2b
XR_005040526.1 mRNA downstream 10518 36125015 ~ 36145697 (-) False nf2b
XM_036968291.1 mRNA downstream 10520 36125015 ~ 36145695 (-) False nf2b
XM_021591610.2 mRNA upstream 5063 36163149 ~ 36165830 (-) True LOC110510222
XM_021591613.2 mRNA upstream 34017 36192103 ~ 36194036 (-) True LOC110510224
XM_021591603.2 mRNA upstream 37323 36195409 ~ 36196374 (-) True LOC110510219
XM_021591602.2 mRNA upstream 42682 36200768 ~ 36221187 (-) True LOC110510218
XM_021591601.2 mRNA upstream 51998 36210084 ~ 36211474 (-) True LOC110510217
TU2491621 other downstream 193383 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1346912 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1346912 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1814402 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 2008896 34121482 ~ 34147319 (-) False G2177991
TU2491931 other upstream 346387 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 348454 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 376011 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 376011 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 819068 36977154 ~ 36979761 (-) True LOC110509384

Expression Profile