RNA id: TU2491944


Basic Information

Item Value
RNA id TU2491944
length 558
RNA type TUCP
GC content 0.44
exon number 2
gene id G2180120
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36506540 ~ 36507120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggccaatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcagtcgtatagtgcacaaatctggcttttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtagtttaagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccatgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaaaaaaacctgatggagtctgcaaaagacctgactgagacggagatttgtcttccaacaagacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491911 lncRNA downstream 9049 36497188 ~ 36497491 (-) True G2180114
TU2491909 lncRNA downstream 16642 36489612 ~ 36489898 (-) True G2180112
TU2491907 lncRNA downstream 36667 36468573 ~ 36469873 (-) True G2180110
TU2491895 lncRNA downstream 55214 36451116 ~ 36451326 (-) True G2180103
TU2491894 lncRNA downstream 56234 36450016 ~ 36450306 (-) True G2180102
TU2491945 lncRNA upstream 10214 36517334 ~ 36519604 (-) True G2180121
TU2491978 lncRNA upstream 57704 36564824 ~ 36566964 (-) False G2180150
TU2491976 lncRNA upstream 58853 36565973 ~ 36567413 (-) True G2180150
TU2492005 lncRNA upstream 95073 36602193 ~ 36602486 (-) True G2180177
TU2492281 lncRNA upstream 175892 36683012 ~ 36684870 (-) True LOC110510204
XM_036968201.1 mRNA downstream 17616 36472792 ~ 36488924 (-) False LOC110510210
XM_036967853.1 mRNA upstream 136828 36643948 ~ 36661243 (-) False LOC110510208
XM_021591591.2 mRNA upstream 136828 36643948 ~ 36663307 (-) False LOC110510208
XR_002471538.2 mRNA upstream 138416 36645536 ~ 36663311 (-) True LOC110510208
XM_036967854.1 mRNA upstream 157882 36665002 ~ 36682231 (-) True gfpt2
XM_021591580.2 mRNA upstream 176946 36684066 ~ 36693105 (-) False LOC110510204
TU2491621 other downstream 543708 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1697237 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1697237 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 2164727 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 2359221 34121482 ~ 34147319 (-) False G2177991
TU2491922 other upstream 26977 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 26977 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 470034 36977154 ~ 36979761 (-) True LOC110509384
TU2492475 other upstream 474837 36981957 ~ 36982709 (-) True G2180587
TU2493150 other upstream 725749 37232869 ~ 37233899 (-) True G2181143

Expression Profile